Re: [AMBER] Effective Way To Perform Molecular Dynamics Simulation

From: Carlos Simmerling <>
Date: Sun, 29 Nov 2020 06:32:53 -0500

Perhaps this is the one you mean?

On Sat, Nov 28, 2020, 6:21 PM Erdem Yeler <> wrote:

> Hello amberers,
> I am searching for an article that suggests an effective way to perform
> molecular dynamics simulation. Actually, a few months ago I saw an article
> in one of the answers here. In this article, a molecular dynamics
> simulation method consisting of 12 steps was proposed and according to this
> article with these steps it was possible to obtain very low RMSD in
> simulations. It would be great if I found it again, I searched for this
> article for hours in past answers but could not find it. Anyway, are there
> any similar articles that amber members can recommend to me?
> Thank you,
> Erdem
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Received on Sun Nov 29 2020 - 04:00:02 PST
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