On Thu, Nov 19, 2020 at 2:18 AM aishen <aishen.free.fr> wrote:
> Hi,
>
> First thanks for sharing this amber20 tutorial with jupyter notebook. As
> I am new to amber I use them a lot to learn how I could use them with
> pymol because I don't like vmd (though it's an excellent soft) but the
> interface in linux is not very agreable (I know pro don't care much
> about this), so I prefer use nglview, threejs or ammolite/biotite to
> get a pymol sight.
>
> My question is : Does anybody know more attempt amber in jupyter
> notebook than on the web site ?
>
>
Hi Henri,
nglview is simply a visualization software, so you can just let your
imagination run wild.
I don't have a direct answer for you, but I suggest to:
- play with NGL webapp (which is used by nglview):
http://nglviewer.org/ngl/
- read the docs: http://nglviewer.org/nglview/latest/
- see how nglview is used by other softwares:
https://github.com/nglviewer/nglview#projects-integrating-nglview
(e.g: https://github.com/pyiron/pyiron,
or cando: https://github.com/cando-developers/cando-demos
)
- for direct questions about nglview, it would be better to open a new
issue here: https://github.com/nglviewer/nglview/issues
Disclaim: I am the lead developer of nglview and was the person who wrote
the nglview-related tutorials in amber.
Hai
> Best regards
>
> Henri
>
>
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Received on Mon Nov 23 2020 - 18:30:03 PST
