Amber Archive Aug 2018: by subject

[AMBER] # of Coordinates Mismatch in PCA
- Jason Swails (Tue Aug 21 2018 - 15:15:07 PDT)
- Robert Molt (Tue Aug 21 2018 - 09:57:35 PDT)
- Daniel Roe (Tue Aug 21 2018 - 09:29:22 PDT)
- Robert Molt (Tue Aug 21 2018 - 09:09:43 PDT)
- Daniel Roe (Tue Aug 21 2018 - 06:39:30 PDT)
- Jason Swails (Mon Aug 20 2018 - 19:54:01 PDT)
- Robert Molt (Mon Aug 20 2018 - 13:50:18 PDT)
- Robert Molt (Tue Aug 14 2018 - 18:21:41 PDT)
- Jason Swails (Tue Aug 14 2018 - 16:55:05 PDT)
- Kenneth Huang (Tue Aug 14 2018 - 13:20:34 PDT)
- Robert Molt (Mon Aug 13 2018 - 18:07:24 PDT)
- Kenneth Huang (Sun Aug 12 2018 - 20:21:38 PDT)
- Robert Molt (Sat Aug 11 2018 - 22:04:35 PDT)
[AMBER] .frcmod_file_generation
- Antonio Amber Carlesso (Tue Aug 07 2018 - 22:59:40 PDT)
- David A Case (Tue Aug 07 2018 - 13:07:52 PDT)
- Antonio Amber Carlesso (Tue Aug 07 2018 - 07:57:39 PDT)
[AMBER] A part of protein molecule moving out of the box
- Carlos Simmerling (Mon Aug 27 2018 - 05:49:48 PDT)
- Sanjib Paul (Sun Aug 26 2018 - 23:16:36 PDT)
[AMBER] A question about tleap
- Nisha Amarnath Jonniya (Tue Aug 14 2018 - 01:50:04 PDT)
- 龚乾坤 (Tue Aug 14 2018 - 01:01:56 PDT)
[AMBER] About calculating entropy in MM_PB/GBSA using mm_pbsa.pl
- David A Case (Fri Aug 17 2018 - 06:12:45 PDT)
- 龚乾坤 (Fri Aug 17 2018 - 00:17:32 PDT)
[AMBER] Adding box dimension
- David Cerutti (Mon Aug 06 2018 - 11:50:14 PDT)
- Simon Kit Sang Chu (Mon Aug 06 2018 - 05:04:14 PDT)
- David A Case (Mon Aug 06 2018 - 05:00:41 PDT)
- Simon Kit Sang Chu (Sun Aug 05 2018 - 09:31:19 PDT)
[AMBER] alkyl chain unsaturated bond
- Dickson, Callum (Thu Aug 16 2018 - 07:16:44 PDT)
- Vijay Achari (Thu Aug 16 2018 - 05:26:46 PDT)
- Dickson, Callum (Mon Aug 13 2018 - 07:03:18 PDT)
- Vijay Achari (Sun Aug 12 2018 - 14:58:42 PDT)
[AMBER] AM1BCC challenge with atomic types recognition and convertion of .ac to .mol2
- Sergey Samsonov (Fri Aug 17 2018 - 00:03:21 PDT)
- David A Case (Thu Aug 16 2018 - 08:46:20 PDT)
- Sergey Samsonov (Thu Aug 16 2018 - 08:05:29 PDT)
[AMBER] Amber 18 targeted MD errorin input::atommask.f::pop_evalstack stack underflow
- Daniel Roe (Mon Aug 27 2018 - 09:38:45 PDT)
- 李耀 (Mon Aug 27 2018 - 00:24:27 PDT)
[AMBER] Amber Installation: MPI Error
- David A Case (Fri Aug 10 2018 - 05:10:56 PDT)
- Aravind Ravichandran (Fri Aug 10 2018 - 00:07:24 PDT)
[AMBER] Amber16 installation error
- David A Case (Mon Aug 27 2018 - 18:04:03 PDT)
- Renato Araujo (Mon Aug 27 2018 - 17:35:08 PDT)
- Renato Araujo (Mon Aug 27 2018 - 17:13:47 PDT)
- Bill Ross (Mon Aug 27 2018 - 17:07:35 PDT)
- Renato Araujo (Mon Aug 27 2018 - 16:50:44 PDT)
- Sushi Shilpa (Fri Aug 03 2018 - 23:43:37 PDT)
- Sushi Shilpa (Fri Aug 03 2018 - 05:15:08 PDT)
- Sushi Shilpa (Fri Aug 03 2018 - 05:14:15 PDT)
- Matias Machado (Fri Aug 03 2018 - 05:08:17 PDT)
- Matias Machado (Fri Aug 03 2018 - 05:04:44 PDT)
- Sushi Shilpa (Fri Aug 03 2018 - 04:44:20 PDT)
- Matias Machado (Fri Aug 03 2018 - 04:38:15 PDT)
- Sushi Shilpa (Fri Aug 03 2018 - 03:46:33 PDT)
[AMBER] amber18 and amazon aws
- Luca Codutti (Wed Aug 22 2018 - 03:45:47 PDT)
- David Cerutti (Mon Aug 13 2018 - 08:57:32 PDT)
- Luca Codutti (Mon Aug 13 2018 - 08:37:44 PDT)
[AMBER] Amber18 error: an illegal memory access was encountered launching kernel kNLSkinTest
- David A Case (Sun Aug 26 2018 - 06:10:01 PDT)
- accuratefreeenergy.gmail.com (Sat Aug 25 2018 - 06:30:40 PDT)
- 李耀 (Sat Aug 25 2018 - 06:22:32 PDT)
[AMBER] Amber18 on NVIDIA Quadro Cards
- mish (Fri Aug 10 2018 - 04:01:41 PDT)
- Ross Walker (Thu Aug 09 2018 - 06:56:20 PDT)
- Ross Walker (Thu Aug 09 2018 - 06:40:16 PDT)
- mish (Thu Aug 09 2018 - 02:10:14 PDT)
- malkeet singh Bahia (Thu Aug 09 2018 - 02:09:27 PDT)
- mish (Thu Aug 09 2018 - 01:54:41 PDT)
- James Kress (Wed Aug 08 2018 - 12:13:27 PDT)
- Ross Walker (Wed Aug 08 2018 - 11:53:49 PDT)
- Ross Walker (Wed Aug 08 2018 - 11:52:50 PDT)
- David Cerutti (Wed Aug 08 2018 - 10:48:01 PDT)
- James Kress (Wed Aug 08 2018 - 10:22:54 PDT)
- Ross Walker (Wed Aug 08 2018 - 09:55:17 PDT)
- mish (Wed Aug 08 2018 - 08:51:02 PDT)
[AMBER] Are there any forcefield present of bio-organic polyphosphate in AMBER ??
- Alechania Misturini (Mon Aug 27 2018 - 08:52:21 PDT)
- Saikat Pal (Mon Aug 27 2018 - 08:10:06 PDT)
[AMBER] asking about PBRadii in MMPBSA an other else
- Setyanto Md (Wed Aug 01 2018 - 04:49:16 PDT)
[AMBER] ASMD for decrease in distance between ligand and catalytic site
- sangita kachhap (Wed Aug 22 2018 - 03:59:22 PDT)
- Feng Pan (Tue Aug 21 2018 - 20:35:23 PDT)
- sangita kachhap (Tue Aug 21 2018 - 03:42:04 PDT)
[AMBER] Atom Types for carbons with unsaturated bond
- Vijay Achari (Mon Aug 06 2018 - 01:37:22 PDT)
[AMBER] Best Methods
- Alechania Misturini (Mon Aug 27 2018 - 09:28:00 PDT)
- Leon Hardy (Mon Aug 27 2018 - 06:01:58 PDT)
[AMBER] Calculate protein energy from simulation trajectory
- Adam Jo Elatico (Thu Aug 02 2018 - 01:10:28 PDT)
[AMBER] Can I calculate the domain-domain interaction energy using the MMPBSA.py tool?
- maryam azimzadehirani (Mon Aug 13 2018 - 03:35:43 PDT)
[AMBER] Change in boxlength during memebrane simulation
- Sally Pias (Fri Aug 10 2018 - 15:13:08 PDT)
- David Cerutti (Fri Aug 03 2018 - 17:07:33 PDT)
- Chris Neale (Fri Aug 03 2018 - 15:50:40 PDT)
- David Cerutti (Fri Aug 03 2018 - 15:22:06 PDT)
- Sally Pias (Fri Aug 03 2018 - 14:55:35 PDT)
- somdev pahari (Fri Aug 03 2018 - 10:05:05 PDT)
- David Cerutti (Fri Aug 03 2018 - 08:19:00 PDT)
- somdev pahari (Fri Aug 03 2018 - 07:59:19 PDT)
[AMBER] checkmolecule.c
- John Kulp (Thu Aug 16 2018 - 05:35:27 PDT)
- Scott Brozell (Wed Aug 15 2018 - 10:48:41 PDT)
- David A Case (Wed Aug 08 2018 - 11:56:04 PDT)
- David A Case (Wed Aug 08 2018 - 11:35:50 PDT)
- John L. Kulp, Jr. (Wed Aug 08 2018 - 06:10:13 PDT)
[AMBER] COM pulling in direction
- Meng Wu (Tue Aug 07 2018 - 18:59:31 PDT)
- Feng Pan (Tue Aug 07 2018 - 05:54:52 PDT)
- Meng Wu (Mon Aug 06 2018 - 18:51:28 PDT)
- Meng Wu (Sat Aug 04 2018 - 02:08:56 PDT)
- Meng Wu (Fri Aug 03 2018 - 02:52:24 PDT)
[AMBER] command not found
- David A Case (Fri Aug 10 2018 - 05:14:22 PDT)
- Sushi Shilpa (Fri Aug 10 2018 - 04:47:41 PDT)
[AMBER] Constant pH simulation in explicit solvent
- Nikolay N. Kuzmich (Thu Aug 02 2018 - 03:32:35 PDT)
- Eric Lang (Wed Aug 01 2018 - 03:19:53 PDT)
- Nikolay N. Kuzmich (Wed Aug 01 2018 - 02:32:06 PDT)
[AMBER] counterions_automatic
- Antonio Amber Carlesso (Tue Aug 07 2018 - 07:59:26 PDT)
- Matias Machado (Sun Aug 05 2018 - 13:31:24 PDT)
- Antonio Amber Carlesso (Sun Aug 05 2018 - 08:56:50 PDT)
[AMBER] cpptraj / ambpdb only selected atoms / residues
- Daniel Roe (Thu Aug 09 2018 - 11:19:35 PDT)
- Simon Kit Sang Chu (Thu Aug 09 2018 - 10:30:54 PDT)
- Daniel Roe (Thu Aug 09 2018 - 09:23:54 PDT)
- Simon Kit Sang Chu (Thu Aug 09 2018 - 09:04:36 PDT)
[AMBER] cpptraj and ptraj not installed
- Hai Nguyen (Sun Aug 19 2018 - 08:04:40 PDT)
- Subrata Paul (Sun Aug 19 2018 - 04:49:54 PDT)
[AMBER] CPPTRAJ issues parsing NETCDF RST file
- Gustaf Olsson (Thu Aug 30 2018 - 23:20:07 PDT)
- Daniel Roe (Thu Aug 30 2018 - 08:43:43 PDT)
- Gustaf Olsson (Thu Aug 30 2018 - 07:35:15 PDT)
- Daniel Roe (Thu Aug 30 2018 - 05:46:59 PDT)
- Gustaf Olsson (Thu Aug 30 2018 - 05:20:09 PDT)
[AMBER] Cpptraj not working
- Daniel Roe (Thu Aug 09 2018 - 09:37:09 PDT)
- Subrata Paul (Thu Aug 09 2018 - 09:33:42 PDT)
- Marcelo Andrade Chagas (Thu Aug 09 2018 - 04:52:16 PDT)
- Subrata Paul (Thu Aug 09 2018 - 03:38:53 PDT)
[AMBER] cpptraj segmentation fault when using avgout in cluster
- Charo del Genio (Tue Aug 21 2018 - 10:21:36 PDT)
- Daniel Roe (Tue Aug 21 2018 - 08:27:08 PDT)
- Charo del Genio (Thu Aug 16 2018 - 03:55:11 PDT)
[AMBER] Distance HH TIP3P
- David Sáez (Fri Aug 31 2018 - 12:55:49 PDT)
[AMBER] eCheminfo Oxford 3-7 Sep., Training and Innovation Course in Drug Design, bursary and early-bird deadline approaching quickly
- Thomas Exner (Fri Aug 03 2018 - 04:07:56 PDT)
[AMBER] Eigenvalues from PCA in cpptraj
- Daniel Roe (Wed Aug 01 2018 - 09:59:16 PDT)
- Adam Jo Elatico (Wed Aug 01 2018 - 09:49:36 PDT)
- Daniel Roe (Wed Aug 01 2018 - 09:12:48 PDT)
- Adam Jo Elatico (Wed Aug 01 2018 - 04:39:50 PDT)
[AMBER] Erreneous PMF
- Stefan Ivanov (Fri Aug 10 2018 - 16:57:20 PDT)
- Dickson, Callum (Fri Aug 10 2018 - 10:53:16 PDT)
- Stefan Ivanov (Thu Aug 09 2018 - 18:31:15 PDT)
- Dickson, Callum (Thu Aug 09 2018 - 06:21:22 PDT)
- Stefan Ivanov (Wed Aug 08 2018 - 23:21:14 PDT)
[AMBER] Error for Amber16 and Amber tools 17 installation
- maryam azimzadehirani (Tue Aug 07 2018 - 05:56:28 PDT)
- Kevin Keane (USD) (Sun Aug 05 2018 - 00:03:41 PDT)
- David A Case (Sat Aug 04 2018 - 06:41:34 PDT)
- maryam azimzadehirani (Sat Aug 04 2018 - 03:19:12 PDT)
- Josh Berryman (Fri Aug 03 2018 - 12:34:42 PDT)
- maryam azimzadehirani (Fri Aug 03 2018 - 05:16:11 PDT)
[AMBER] Error in Running heating in GPU enabled AMBER
- David A Case (Fri Aug 17 2018 - 18:28:41 PDT)
- kuldeep singh (Fri Aug 17 2018 - 10:50:02 PDT)
[AMBER] Error: System density has likely changed
- David Cerutti (Mon Aug 27 2018 - 10:51:49 PDT)
- David Cerutti (Mon Aug 27 2018 - 10:49:14 PDT)
- David A Case (Mon Aug 27 2018 - 05:08:53 PDT)
- M RCC (Mon Aug 27 2018 - 02:40:07 PDT)
[AMBER] error_antechamber (QMMM: ERROR!)
- Goetz, Andreas (Fri Aug 03 2018 - 10:57:31 PDT)
- Atila Petrosian (Fri Aug 03 2018 - 08:52:17 PDT)
- Gustavo Seabra (Fri Aug 03 2018 - 08:23:28 PDT)
- Atila Petrosian (Fri Aug 03 2018 - 07:11:30 PDT)
[AMBER] Free energy landscape on principal components
- Adam Jo Elatico (Thu Aug 02 2018 - 08:34:04 PDT)
[AMBER] Fwd: Issue with imploding structure during heating and equilibration
- Carlos Simmerling (Thu Aug 02 2018 - 05:18:22 PDT)
- David Stevens (Wed Aug 01 2018 - 10:45:46 PDT)
[AMBER] GIST calculation
- Daniel Roe (Tue Aug 28 2018 - 09:30:00 PDT)
- Steven Ramsey (Tue Aug 28 2018 - 08:31:02 PDT)
- M RCC (Sun Aug 26 2018 - 23:32:07 PDT)
[AMBER] GPUs
- David Cerutti (Wed Aug 01 2018 - 16:13:10 PDT)
- Alexandra Carvalho (Wed Aug 01 2018 - 14:11:49 PDT)
[AMBER] H-bond between the substrate molecule and protein in the MD traj
- Daniel Roe (Thu Aug 30 2018 - 06:34:51 PDT)
- Meng Wu (Wed Aug 22 2018 - 01:18:13 PDT)
[AMBER] Heating error in complex
- David A Case (Fri Aug 31 2018 - 06:47:36 PDT)
- sandeep singh (Thu Aug 30 2018 - 13:37:23 PDT)
- David A Case (Thu Aug 30 2018 - 05:55:57 PDT)
- sandeep singh (Wed Aug 29 2018 - 12:52:45 PDT)
[AMBER] How to calculate SASA for an arbitrary solvent
- Kasprzak, Wojciech (NIH/NCI) [C] (Mon Aug 20 2018 - 13:37:19 PDT)
[AMBER] How to convert QM parameters to AMBER force field parameters
- MinYuan (Sat Aug 18 2018 - 06:40:40 PDT)
[AMBER] How to define the speed of pulling ligand in SMD?
- M RCC (Wed Aug 29 2018 - 06:39:41 PDT)
[AMBER] how to install PTRAJ and CPPTRAJ
- Daniel Roe (Thu Aug 09 2018 - 06:30:08 PDT)
- Subrata Paul (Thu Aug 09 2018 - 00:36:39 PDT)
- Rodrigo Galindo-Murillo (Thu Aug 09 2018 - 00:27:39 PDT)
- Subrata Paul (Thu Aug 09 2018 - 00:17:30 PDT)
[AMBER] HOW to type a free CYS molecule
- MinYuan (Wed Aug 15 2018 - 19:38:04 PDT)
- MinYuan (Wed Aug 15 2018 - 19:26:00 PDT)
- Matias Machado (Wed Aug 15 2018 - 14:59:18 PDT)
- David A Case (Wed Aug 15 2018 - 09:48:56 PDT)
- MinYuan (Wed Aug 15 2018 - 06:57:13 PDT)
[AMBER] How to use cpptraj to wrap protein
- Daniel Roe (Fri Aug 31 2018 - 16:31:57 PDT)
- Yang, Tianyi (Fri Aug 31 2018 - 13:04:10 PDT)
- Daniel Roe (Thu Aug 30 2018 - 05:59:36 PDT)
- Yang, Tianyi (Wed Aug 29 2018 - 17:12:19 PDT)
[AMBER] How to use filter command to find the structures of high density during PCA analysis?
- Markowska (Fri Aug 10 2018 - 05:08:41 PDT)
[AMBER] I want to calculate electrostatic and van der Waals energy
- Saikat Pal (Wed Aug 29 2018 - 03:44:03 PDT)
[AMBER] implement_revised_RNA_force_field_general rule?
- Antonio Amber Carlesso (Sun Aug 19 2018 - 04:41:52 PDT)
- David A Case (Sat Aug 18 2018 - 17:01:22 PDT)
- Antonio Amber Carlesso (Sat Aug 18 2018 - 09:59:45 PDT)
- David A Case (Thu Aug 16 2018 - 08:57:49 PDT)
- Matias Machado (Thu Aug 16 2018 - 08:09:58 PDT)
- Antonio Amber Carlesso (Thu Aug 16 2018 - 01:57:47 PDT)
[AMBER] max# cpu's for sander, specify which gpu runs a job
- David Christopher Schröder (Tue Aug 14 2018 - 00:28:32 PDT)
- David A Case (Tue Aug 07 2018 - 13:19:26 PDT)
- David Christopher Schröder (Tue Aug 07 2018 - 09:40:56 PDT)
[AMBER] MCBP force constants
- Seibold, Steve Allan (Wed Aug 01 2018 - 08:18:14 PDT)
[AMBER] MCPB.py with G09 rev. B.01
- Pengfei Li (Tue Aug 07 2018 - 12:16:31 PDT)
- Jinfeng Chen (Thu Aug 02 2018 - 18:26:49 PDT)
[AMBER] metalParm2.xml or metalParm.xml
- Seibold, Steve Allan (Mon Aug 20 2018 - 08:47:27 PDT)
[AMBER] MG Coordination System: Nonbonded Cationic Dummy Model
- Qinghua Liao (Mon Aug 27 2018 - 02:29:26 PDT)
- Aravind Ravichandran (Sun Aug 26 2018 - 22:57:15 PDT)
[AMBER] minimization restrain in Qm-mm/MD
- Szymon Żaczek (Thu Aug 30 2018 - 13:29:30 PDT)
- Thakur, Abhishek (Thu Aug 30 2018 - 12:05:50 PDT)
[AMBER] miRNA-mRNA structure / NAB
- David A Case (Thu Aug 09 2018 - 11:18:25 PDT)
- Atila Petrosian (Thu Aug 09 2018 - 08:59:49 PDT)
[AMBER] mistake in source-code in egb.F90
- Johannes Kalliauer (Thu Aug 09 2018 - 04:15:45 PDT)
[AMBER] MMPBSA.PY
- 龚乾坤 (Fri Aug 17 2018 - 00:21:07 PDT)
- Jason Swails (Tue Aug 14 2018 - 19:20:33 PDT)
- 龚乾坤 (Sun Aug 12 2018 - 19:37:37 PDT)
[AMBER] Multiple PDB files to a MDCRD file
- Alechania Misturini (Thu Aug 02 2018 - 08:05:58 PDT)
- Alechania Misturini (Thu Aug 02 2018 - 08:00:37 PDT)
- David A Case (Wed Aug 01 2018 - 17:09:28 PDT)
- Alechania Misturini (Wed Aug 01 2018 - 10:10:41 PDT)
- Daniel Roe (Wed Aug 01 2018 - 09:44:30 PDT)
- Charles-Alexandre Mattelaer (Wed Aug 01 2018 - 09:22:17 PDT)
- Daniel Roe (Wed Aug 01 2018 - 09:15:12 PDT)
- Alechania Misturini (Wed Aug 01 2018 - 06:58:26 PDT)
[AMBER] Multiple trajectory analysis with CPPTRAJ and getting output for each of them separately
- Daniel Roe (Mon Aug 20 2018 - 11:07:24 PDT)
- Luka Bilić (Thu Aug 16 2018 - 00:06:23 PDT)
[AMBER] Mutation Free Energy
- David A Case (Fri Aug 17 2018 - 06:21:48 PDT)
- hosein geraili (Fri Aug 17 2018 - 03:28:22 PDT)
[AMBER] NCSU_SMD for protein-ligand complex pulling
- Feng Pan (Sat Aug 25 2018 - 09:11:21 PDT)
- M RCC (Sat Aug 25 2018 - 08:15:08 PDT)
[AMBER] Need help regarding calculation of Coordination number from RDF Profile
- Daniel Roe (Fri Aug 24 2018 - 10:02:34 PDT)
- Bharat Manna (Fri Aug 24 2018 - 03:21:02 PDT)
[AMBER] Need help regarding Lifetime Curve of Hydrogen bond analysis
- Daniel Roe (Thu Aug 30 2018 - 06:15:52 PDT)
- Bharat Manna (Wed Aug 22 2018 - 22:32:25 PDT)
[AMBER] Normal mode calculation on a truncated system
- Marko Tomin (Thu Aug 30 2018 - 08:13:33 PDT)
[AMBER] number of interconversions from free energy landscape (FEL) plot
- Chetna Tyagi (Wed Aug 08 2018 - 05:54:17 PDT)
[AMBER] Parameters for non-standard residues
- Junmei Wang (Mon Aug 06 2018 - 05:57:13 PDT)
- David A Case (Mon Aug 06 2018 - 05:04:12 PDT)
- Zhonghua Xia (Mon Aug 06 2018 - 04:47:52 PDT)
- Anuja Ware (Mon Aug 06 2018 - 02:49:13 PDT)
[AMBER] Possible bug on addLJType command of Parmed
- Matias Machado (Thu Aug 02 2018 - 12:52:06 PDT)
- Jason Swails (Wed Aug 01 2018 - 14:20:07 PDT)
[AMBER] PrmtopError: Inconsistent charge definition for atom
- Jason Swails (Tue Aug 14 2018 - 19:27:45 PDT)
- Santanu Santra (Thu Aug 09 2018 - 06:40:08 PDT)
[AMBER] problem with amber 16
- giovanna rogati (Wed Aug 15 2018 - 23:04:20 PDT)
- David A Case (Wed Aug 08 2018 - 06:41:51 PDT)
- giovanna rogati (Wed Aug 08 2018 - 01:29:38 PDT)
[AMBER] Problem with QMMM with Amber/Gaussian interface.
- Goetz, Andreas (Tue Aug 14 2018 - 22:33:57 PDT)
- Sadra Aghajani (Tue Aug 14 2018 - 20:53:47 PDT)
[AMBER] Problems with constant pH production step
- Jason Swails (Fri Aug 24 2018 - 07:25:12 PDT)
- Cruzeiro,Vinicius Wilian D (Fri Aug 24 2018 - 03:11:30 PDT)
- Helena Damtoft Tjørnelund (Fri Aug 24 2018 - 02:47:18 PDT)
- Cruzeiro,Vinicius Wilian D (Fri Aug 24 2018 - 01:52:42 PDT)
- Helena Damtoft Tjørnelund (Thu Aug 23 2018 - 23:41:15 PDT)
- Jason Swails (Thu Aug 23 2018 - 07:48:45 PDT)
- Bill Ross (Thu Aug 23 2018 - 01:25:46 PDT)
- Helena Damtoft Tjørnelund (Thu Aug 23 2018 - 01:18:27 PDT)
[AMBER] Protein_ligand_preparation_general_rule
- Antonio Amber Carlesso (Wed Aug 29 2018 - 02:56:00 PDT)
- David A Case (Tue Aug 28 2018 - 14:35:25 PDT)
- Keiran Corbett (Tue Aug 28 2018 - 06:41:51 PDT)
- Antonio Amber Carlesso (Tue Aug 28 2018 - 05:59:28 PDT)
[AMBER] QM/MM link atoms
- Goetz, Andreas (Thu Aug 02 2018 - 15:46:30 PDT)
- James Kress (Thu Aug 02 2018 - 14:12:53 PDT)
- Goetz, Andreas (Thu Aug 02 2018 - 12:14:19 PDT)
- Gustavo Seabra (Thu Aug 02 2018 - 08:25:00 PDT)
- emanuele falbo (Thu Aug 02 2018 - 07:59:08 PDT)
[AMBER] QM/MM Thermodynamic Integration
- James Kress (Tue Aug 14 2018 - 08:16:45 PDT)
- David A Case (Tue Aug 14 2018 - 07:37:09 PDT)
- emanuele (Tue Aug 14 2018 - 03:44:46 PDT)
[AMBER] R.E.D. Server is down
- Anthony Bogetti (Tue Aug 28 2018 - 10:13:00 PDT)
[AMBER] RDCs in pmemd?
- David A Case (Tue Aug 14 2018 - 08:03:03 PDT)
- Thomas Pochapsky (Mon Aug 06 2018 - 09:02:32 PDT)
[AMBER] Reading grid data from standard datafile
- I Lőrincz (Fri Aug 03 2018 - 10:35:38 PDT)
[AMBER] RED SERVER DOWN
- Corinn Durham (Wed Aug 29 2018 - 09:44:23 PDT)
[AMBER] Regarding the MPI error in parallel running of 3D-RISM
- Tyler Luchko (Lists) (Wed Aug 01 2018 - 15:55:25 PDT)
[AMBER] Reproduce part of AMBER trajectory
- Supriyo Bhattacharya (Wed Aug 01 2018 - 16:36:03 PDT)
[AMBER] RES: error_antechamber (QMMM: ERROR!)
- Atila Petrosian (Fri Aug 03 2018 - 12:28:07 PDT)
- gustavo.seabra.gmail.com (Fri Aug 03 2018 - 11:56:45 PDT)
[AMBER] Research Programmers Positions Available
- João Ribeiro (Fri Aug 10 2018 - 11:35:23 PDT)
[AMBER] restraintmask input setup
- David A Case (Thu Aug 23 2018 - 05:10:58 PDT)
- Lod King (Wed Aug 22 2018 - 18:26:43 PDT)
[AMBER] Restraints on a system
- Matias Machado (Sat Aug 11 2018 - 13:11:48 PDT)
- Matias Machado (Sat Aug 11 2018 - 13:06:43 PDT)
- Debarati DasGupta (Tue Aug 07 2018 - 14:15:06 PDT)
[AMBER] Running a small minimization with amber 16 package
- Scott Brozell (Mon Aug 06 2018 - 16:42:16 PDT)
- Debarati DasGupta (Mon Aug 06 2018 - 14:38:36 PDT)
[AMBER] sander.MPI running on only one node
- Matias Machado (Sat Aug 11 2018 - 08:20:20 PDT)
- Leena Aggarwal (Sat Aug 11 2018 - 03:01:15 PDT)
[AMBER] SCF convergence problems and write density matrix
- Anaid Flores (Sun Aug 19 2018 - 20:57:22 PDT)
- Sadra Aghajani (Sat Aug 18 2018 - 09:34:38 PDT)
- Gerald Monard (Sat Aug 18 2018 - 00:55:01 PDT)
- Anaid Flores (Fri Aug 17 2018 - 15:08:39 PDT)
[AMBER] Scripting Bash to tleap
- Wesley Michael Botello-Smith (Mon Aug 20 2018 - 05:48:50 PDT)
- Wesley Michael Botello-Smith (Mon Aug 20 2018 - 05:45:04 PDT)
- David A Case (Mon Aug 20 2018 - 04:39:57 PDT)
- Keiran Corbett (Mon Aug 20 2018 - 02:39:32 PDT)
[AMBER] Solute-solvent hydrogen bond lifetime
- ATUL KUMAR (Tue Aug 07 2018 - 00:03:29 PDT)
- Daniel Roe (Mon Aug 06 2018 - 06:18:27 PDT)
- ATUL KUMAR (Fri Aug 03 2018 - 06:01:36 PDT)
[AMBER] Speeding up sqm, PM6 vs AM1 for am1-bcc
- David A Case (Wed Aug 08 2018 - 11:59:07 PDT)
- John L. Kulp, Jr. (Wed Aug 08 2018 - 06:13:14 PDT)
[AMBER] Steered molecular dynamics..... pulling force is not decreasing
- Feng Pan (Fri Aug 31 2018 - 15:14:33 PDT)
- M RCC (Thu Aug 30 2018 - 03:01:51 PDT)
[AMBER] System density decrease during accelerated MD: why?
- Nikolay N. Kuzmich (Thu Aug 02 2018 - 07:13:59 PDT)
[AMBER] Thank you
- elias_christoforides (Mon Aug 27 2018 - 06:57:28 PDT)
- Tai Tze Hong (Fri Aug 24 2018 - 19:10:56 PDT)
[AMBER] The instructions of the .out file
- Zhonghua Xia (Fri Aug 17 2018 - 06:19:34 PDT)
[AMBER] The R.E.D. server is down
- Bellesis, Andrew G (Wed Aug 29 2018 - 09:36:01 PDT)
[AMBER] TLEAP script
- Keiran Corbett (Mon Aug 20 2018 - 02:20:34 PDT)
- David A Case (Fri Aug 17 2018 - 06:29:37 PDT)
- Keiran Corbett (Fri Aug 17 2018 - 03:58:59 PDT)
[AMBER] tleap_protein_preparation_general_rule
- Antonio Amber Carlesso (Tue Aug 14 2018 - 14:41:27 PDT)
- Matias Machado (Tue Aug 14 2018 - 13:48:08 PDT)
- Antonio Amber Carlesso (Tue Aug 14 2018 - 11:20:17 PDT)
- David A Case (Tue Aug 14 2018 - 07:33:22 PDT)
- Antonio Amber Carlesso (Tue Aug 14 2018 - 01:06:07 PDT)
[AMBER] Umbrella sampling rst file error
- David A Case (Thu Aug 23 2018 - 05:04:02 PDT)
- M RCC (Wed Aug 22 2018 - 12:02:38 PDT)
[AMBER] Umbrella sampling run error
- Rakesh Srivastava (Mon Aug 20 2018 - 23:23:28 PDT)
- Bill Ross (Mon Aug 20 2018 - 22:44:46 PDT)
- Rakesh Srivastava (Mon Aug 20 2018 - 21:43:37 PDT)
[AMBER] update to Amber18's pmemd.cuda code
- David A Case (Sat Aug 18 2018 - 06:08:35 PDT)
[AMBER] Velocity Format in AMBER
- David A Case (Thu Aug 02 2018 - 09:21:56 PDT)
- BLEY Michael (Thu Aug 02 2018 - 06:58:24 PDT)
[AMBER] very slow implicit simulation on GPU!!!
- Jason Swails (Wed Aug 01 2018 - 14:22:54 PDT)
[AMBER] Warning: DISABLING BOX in topology '<name>.pdb'!
- Daniel Roe (Mon Aug 20 2018 - 11:12:05 PDT)
- Dmitry Suplatov (Sun Aug 12 2018 - 04:04:19 PDT)
[AMBER] Where is the source code adjusting the size of the periodic boundary condition box in NPT ensemble ?
- jinfeng liu (Fri Aug 17 2018 - 07:04:58 PDT)
- David A Case (Fri Aug 17 2018 - 06:34:22 PDT)
- jinfeng liu (Fri Aug 17 2018 - 01:15:40 PDT)
[AMBER] X-mer analysis or statistics ?
- Marek Maly (Thu Aug 09 2018 - 16:49:29 PDT)

Amber Archive Aug 2018 by subject