Re: [AMBER] .frcmod_file_generation

From: Antonio Amber Carlesso <antonio.amber.carlesso.gmail.com>
Date: Wed, 8 Aug 2018 07:59:40 +0200

Hi David and all,
thank you for your reply!
yes, you are right.. I am exactly referring to that article:
https://doi.org/10.1073/pnas.1713027115



as suggested by David, do someone on the list has made the changes and can
share their files?


thank you!

On Tue, Aug 7, 2018 at 10:07 PM, David A Case <david.case.rutgers.edu>
wrote:

> On Tue, Aug 07, 2018, Antonio Amber Carlesso wrote:
> >
> > We would like to create a “.frcmod file” to use a new RNA force field
> > parameters that was presented in a recent PNAS paper..
>
> Are you refering to the paper by Tan, Piana, Dirks and Shaw? I'm hoping
> that someone on the list has made the changes and can share their files.
>
> Note that you need more than a frcmod file: the modifications involve
> charge changes, so new libraries are needed as well. [Also note: in
> addition to the parameters in the Tables and Supplementary Tables in the
> paper, modifications proposed in Ref. 26 were also incorporated. So
> care has to be taken in preparing these files....]
>
> ....dac
>
>
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Received on Tue Aug 07 2018 - 23:00:01 PDT
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