[AMBER] H-bond between the substrate molecule and protein in the MD traj

From: Meng Wu <wumeng.shanghaitech.edu.cn>
Date: Wed, 22 Aug 2018 08:18:13 +0000

Deal amber users,

    I am going to make the H-bond analysis between the substrate molecule--acetates and the channel protein during the MD process in which substrate molecules pass through. I have read the 'hbond' command in Amber16 manual but still have no idea, could anybody give some guidance ? Thank you in advance!

Best regards,
Vector

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Received on Wed Aug 22 2018 - 01:30:02 PDT