Amber Archive Oct 2021: by subject

[AMBER] [SPAM] Help with carbohydrate nomenclature
- Daniel Roe (Fri Oct 08 2021 - 12:53:40 PDT)
- Rafael Nunes (Fri Oct 08 2021 - 09:22:15 PDT)
[AMBER] Accelerated dissociation events in MD simulation by temperature increase?
- Matthew Guberman-Pfeffer (Mon Oct 11 2021 - 12:49:06 PDT)
- Carlos Simmerling (Mon Oct 11 2021 - 12:40:09 PDT)
- Liao (Mon Oct 11 2021 - 12:33:53 PDT)
[AMBER] Amber20 benchmarks for RTX A4000
- Vaibhav Dixit (Fri Oct 22 2021 - 09:14:00 PDT)
[AMBER] Amber20/AmberTools21 Installation Test Errors
- Ravi Abrol (Thu Oct 14 2021 - 01:03:24 PDT)
- David A Case (Wed Oct 13 2021 - 06:16:07 PDT)
- Ravi Abrol (Wed Oct 13 2021 - 00:23:21 PDT)
[AMBER] Amber21 installation using Docker will be Parallel or Serial?
- Jason Swails (Fri Oct 29 2021 - 06:05:34 PDT)
- Erdem Yeler (Tue Oct 26 2021 - 06:32:10 PDT)
[AMBER] Ambertools18 tleap scripts not working when run on Ambertools21
- Jason Swails (Thu Oct 21 2021 - 05:47:35 PDT)
- Daniel Fowles (Thu Oct 21 2021 - 04:21:32 PDT)
[AMBER] Atom type does not shown up in PARMCHK.DAT
- Dr. Anselm Horn (Wed Oct 27 2021 - 00:36:35 PDT)
- Rohanizeidanlou, Sahar (Tue Oct 26 2021 - 16:38:13 PDT)
[AMBER] Atomistic Simulation Center - Invitation to virtual inauguration symposium
- Dr. Anselm Horn (Mon Oct 04 2021 - 05:00:37 PDT)
[AMBER] Automated capping of missing loops?
- David A Case (Mon Oct 18 2021 - 13:44:38 PDT)
- Brian Radak (Mon Oct 18 2021 - 09:11:41 PDT)
- Jason Swails (Mon Oct 18 2021 - 07:32:16 PDT)
- Matias Machado (Sun Oct 17 2021 - 13:26:37 PDT)
- Brian Radak (Fri Oct 15 2021 - 10:52:48 PDT)
- David A Case (Thu Oct 14 2021 - 18:19:23 PDT)
- Brian Radak (Thu Oct 14 2021 - 13:54:34 PDT)
[AMBER] buffer overflow in tleap, AmberTools21, gcc 9.3
- David A Case (Wed Oct 13 2021 - 08:55:28 PDT)
- Alessandro Contini (Fri Oct 01 2021 - 03:02:44 PDT)
[AMBER] bug in pmemd/src/cuda/gpu.cpp line 2852?
- Kellon Belfon (Tue Oct 26 2021 - 12:54:03 PDT)
- thomas.zeiser.rrze.uni-erlangen.de (Mon Oct 25 2021 - 23:19:51 PDT)
- David A Case (Mon Oct 25 2021 - 13:56:50 PDT)
- Thomas Zeiser (Mon Oct 25 2021 - 12:47:41 PDT)
[AMBER] calculate potential energies with imin=5
- David A Case (Fri Oct 15 2021 - 05:09:02 PDT)
- Richard Kullmann (Fri Oct 15 2021 - 02:11:06 PDT)
[AMBER] Calculating viscosity, thermal conductivity and self-diffusion coefficient
- Chloe Jaiswal (Fri Oct 08 2021 - 02:31:48 PDT)
[AMBER] Can I used AMBER 16 CPPTRAJ to perform dynamic cross correlation map?
- priya murugan (Mon Oct 25 2021 - 20:00:09 PDT)
- Daniel Roe (Mon Oct 25 2021 - 07:31:47 PDT)
- priya murugan (Sun Oct 24 2021 - 20:35:21 PDT)
[AMBER] Constant pH MD simulation
- Vinicius Wilian Cruzeiro (Fri Oct 29 2021 - 08:24:22 PDT)
- Jason Swails (Fri Oct 29 2021 - 08:22:21 PDT)
- Divya Rai (Fri Oct 29 2021 - 07:19:15 PDT)
[AMBER] CPPTRAJ
- Rana Rehan Khalid (Wed Oct 06 2021 - 10:55:54 PDT)
- Rana Rehan Khalid (Wed Oct 06 2021 - 09:47:59 PDT)
- Rana Rehan Khalid (Wed Oct 06 2021 - 09:41:52 PDT)
- Daniel Roe (Wed Oct 06 2021 - 09:18:47 PDT)
- Rana Rehan Khalid (Wed Oct 06 2021 - 09:11:45 PDT)
[AMBER] Cpptraj hbond criteria
- Daniel Roe (Tue Oct 05 2021 - 05:43:48 PDT)
[AMBER] cpptraj RMSD reference
- Mac Kevin Braza (Sat Oct 16 2021 - 16:28:02 PDT)
- Mac Kevin Braza (Sat Oct 16 2021 - 16:16:54 PDT)
[AMBER] cudaMemcpy GpuBuffer::Download failed an illegal memory access was encountered
- Rangarajan, Amith (Wed Oct 20 2021 - 09:44:56 PDT)
- David A Case (Wed Oct 20 2021 - 09:17:34 PDT)
- Rangarajan, Amith (Tue Oct 19 2021 - 12:08:42 PDT)
[AMBER] Distanced-based atom selection from the center of mass
- Umesh Roy (Mon Oct 11 2021 - 02:29:59 PDT)
- Daniel Roe (Tue Oct 05 2021 - 07:03:45 PDT)
- Daniel Roe (Sat Oct 02 2021 - 06:10:00 PDT)
- Umesh Roy (Sat Oct 02 2021 - 05:01:20 PDT)
[AMBER] Does minimization require for average pdb structure extract from 2drms plot using CPPTRAJ AMBER 16
- priya murugan (Tue Oct 26 2021 - 03:15:58 PDT)
- Thomas Cheatham (Mon Oct 25 2021 - 13:21:11 PDT)
- Robert Molt (Mon Oct 25 2021 - 12:54:17 PDT)
- James Kress (Mon Oct 25 2021 - 12:48:46 PDT)
- Robert Molt (Mon Oct 25 2021 - 12:31:04 PDT)
- Adrian Roitberg (Mon Oct 25 2021 - 12:26:50 PDT)
- James Kress (Mon Oct 25 2021 - 11:53:57 PDT)
- Adrian Roitberg (Mon Oct 25 2021 - 07:52:10 PDT)
- priya murugan (Mon Oct 25 2021 - 06:28:52 PDT)
- Hector A. Baldoni (Mon Oct 25 2021 - 05:57:02 PDT)
- priya murugan (Mon Oct 25 2021 - 03:17:17 PDT)
- Dr. Anselm Horn (Mon Oct 25 2021 - 02:32:36 PDT)
- priya murugan (Sun Oct 24 2021 - 20:27:09 PDT)
- priya murugan (Sun Oct 24 2021 - 19:23:06 PDT)
[AMBER] Error installing amber macOS M1
- Rodrigo da Silva Bitzer (Tue Oct 05 2021 - 14:58:31 PDT)
- David A Case (Tue Oct 05 2021 - 14:23:08 PDT)
- Rodrigo da Silva Bitzer (Tue Oct 05 2021 - 11:56:19 PDT)
- David A Case (Fri Oct 01 2021 - 05:13:42 PDT)
[AMBER] Error with PDB4AMBER
- Dr. Anselm Horn (Tue Oct 19 2021 - 12:43:08 PDT)
- Rangarajan, Amith (Tue Oct 19 2021 - 11:51:30 PDT)
- Vinicius Wilian Cruzeiro (Tue Oct 19 2021 - 11:33:30 PDT)
- Rangarajan, Amith (Tue Oct 19 2021 - 11:28:29 PDT)
[AMBER] Error: an illegal memory access was encountered launching kernel kClearForces
- David A Case (Fri Oct 29 2021 - 14:25:26 PDT)
- Umesh Roy (Wed Oct 27 2021 - 00:08:33 PDT)
[AMBER] Explicit water molecules in MMPBSA.py: OPC vs TIP3P
- David A Case (Thu Oct 14 2021 - 05:58:38 PDT)
- Lennart Gundelach (Thu Oct 14 2021 - 00:58:38 PDT)
[AMBER] FixCondaShebang Error
- David A Case (Tue Oct 05 2021 - 05:44:29 PDT)
- Satya Pal Singh (Mon Oct 04 2021 - 23:15:37 PDT)
[AMBER] FixCondaShebang persists
- David A Case (Sat Oct 16 2021 - 04:38:26 PDT)
- German P. Barletta (Fri Oct 15 2021 - 12:54:15 PDT)
- David A Case (Thu Oct 14 2021 - 18:06:59 PDT)
- German P. Barletta (Thu Oct 14 2021 - 12:40:30 PDT)
- Stephan Schott (Thu Oct 14 2021 - 09:02:37 PDT)
- David A Case (Thu Oct 14 2021 - 08:41:12 PDT)
- Stephan Schott (Thu Oct 14 2021 - 07:05:17 PDT)
- David A Case (Thu Oct 14 2021 - 06:15:16 PDT)
- German P. Barletta (Thu Oct 14 2021 - 00:42:48 PDT)
- David A Case (Tue Oct 12 2021 - 13:16:25 PDT)
- German P. Barletta (Mon Oct 11 2021 - 04:10:37 PDT)
[AMBER] Freeze DNA during simulation.
- Rana Rehan Khalid (Wed Oct 20 2021 - 12:34:43 PDT)
[AMBER] Fwd: Ambertools21 installation problems
- Victor Nazarychev (Wed Oct 27 2021 - 02:37:29 PDT)
- Victor Nazarychev (Mon Oct 25 2021 - 07:36:28 PDT)
- David A Case (Mon Oct 25 2021 - 06:42:28 PDT)
- Victor Nazarychev (Mon Oct 25 2021 - 01:53:39 PDT)
- David A Case (Sun Oct 24 2021 - 16:41:37 PDT)
- David A Case (Sun Oct 24 2021 - 13:10:39 PDT)
- Victor Nazarychev (Sat Oct 23 2021 - 05:46:43 PDT)
[AMBER] Fwd: Constant pH MD simulation
- Divya Rai (Sat Oct 30 2021 - 12:21:19 PDT)
[AMBER] Fwd: topology file and co-ordinate file making by amber tool (gaff.dat)
- Dr. Anselm Horn (Fri Oct 22 2021 - 05:20:52 PDT)
- vivek rabha (Wed Oct 20 2021 - 22:06:44 PDT)
- Dr. Anselm Horn (Wed Oct 20 2021 - 07:13:19 PDT)
- vivek rabha (Wed Oct 20 2021 - 03:41:09 PDT)
- Dr. Anselm Horn (Wed Oct 20 2021 - 03:26:23 PDT)
- vivek rabha (Wed Oct 20 2021 - 02:58:09 PDT)
[AMBER] Help with carbohydrate nomenclature
- Daniel Roe (Fri Oct 08 2021 - 03:07:55 PDT)
- Hector A. Baldoni (Thu Oct 07 2021 - 19:34:10 PDT)
- Daniel Roe (Thu Oct 07 2021 - 16:09:28 PDT)
[AMBER] How can I download amber 18？
- David A Case (Sun Oct 24 2021 - 12:44:38 PDT)
- Hecate Me (Sat Oct 23 2021 - 01:09:25 PDT)
[AMBER] How I can Remove dna form .rst files
- David A Case (Tue Oct 19 2021 - 05:46:24 PDT)
- Rana Rehan Khalid (Mon Oct 18 2021 - 14:00:16 PDT)
[AMBER] How is correlation computed in cpptraj
- Matthew Guberman-Pfeffer (Mon Oct 25 2021 - 08:07:22 PDT)
- Matthew Guberman-Pfeffer (Mon Oct 25 2021 - 01:45:55 PDT)
[AMBER] How many complex trajectories for mmpbsa computations ?
- Liao (Sun Oct 10 2021 - 16:39:36 PDT)
- Liao (Sun Oct 10 2021 - 16:07:44 PDT)
- Thomas Cheatham (Sun Oct 10 2021 - 15:33:15 PDT)
- Cenk Andac (Sun Oct 10 2021 - 13:20:30 PDT)
[AMBER] How to characterize Binding Sites with cpptraj
- Matthew Guberman-Pfeffer (Wed Oct 13 2021 - 11:07:47 PDT)
[AMBER] How to combine the coordinate and parm7 files of the glycolipid into a protein complex system
- neildancer (Sun Oct 03 2021 - 07:33:49 PDT)
- David A Case (Sat Oct 02 2021 - 05:23:44 PDT)
- neildancer (Fri Oct 01 2021 - 21:09:32 PDT)
[AMBER] How to Compare RDFs for different systems
- Matthew Guberman-Pfeffer (Sat Oct 30 2021 - 14:15:01 PDT)
[AMBER] How to depict Atomic Fluctuations of a specific residue Versus Frames by CPPTRAJ
- Daniel Roe (Thu Oct 14 2021 - 07:17:04 PDT)
- Maghsoud, Yazdan (Tue Oct 12 2021 - 14:23:11 PDT)
[AMBER] How to generate different velocities for same structure during equilibration
- Carlos Simmerling (Mon Oct 11 2021 - 07:20:24 PDT)
- Sadaf Rani (Mon Oct 11 2021 - 04:20:32 PDT)
[AMBER] How to handle Ca2+ ion with 8 coordination Geometry in lectin domain for MD simulation.
- Dr. Anselm Horn (Thu Oct 28 2021 - 04:35:18 PDT)
- Bhat Zahoor (Thu Oct 28 2021 - 01:20:17 PDT)
[AMBER] How to minimize a pdb format file in Amber 16
- priya murugan (Thu Oct 28 2021 - 17:00:00 PDT)
- Carlos Simmerling (Thu Oct 28 2021 - 05:40:04 PDT)
- Hector A. Baldoni (Thu Oct 28 2021 - 05:36:13 PDT)
- priya murugan (Wed Oct 27 2021 - 21:52:36 PDT)
[AMBER] How to minimize average structure (pdb) using Amber 16
- Liao (Wed Oct 13 2021 - 11:05:27 PDT)
- priya murugan (Wed Oct 13 2021 - 09:23:48 PDT)
[AMBER] How to reshuffle traj frames
- Daniel Roe (Sat Oct 02 2021 - 06:13:20 PDT)
- Matthew Guberman-Pfeffer (Fri Oct 01 2021 - 20:51:41 PDT)
[AMBER] How to set multiple positional restraints during minimization
- Carlos Simmerling (Fri Oct 08 2021 - 08:34:47 PDT)
- Sadaf Rani (Fri Oct 08 2021 - 08:25:06 PDT)
[AMBER] How to superpose the solvated box to the original pdb structure?
- Daniel Roe (Thu Oct 14 2021 - 07:21:14 PDT)
- David A Case (Tue Oct 12 2021 - 13:31:38 PDT)
- Gao Zhenting (Tue Oct 05 2021 - 08:49:50 PDT)
- David A Case (Tue Oct 05 2021 - 05:40:42 PDT)
- Carlos Simmerling (Tue Oct 05 2021 - 04:27:03 PDT)
- Reyes Nuñez Franco (Tue Oct 05 2021 - 04:21:06 PDT)
- Gao Zhenting (Tue Oct 05 2021 - 04:04:07 PDT)
- Dr. Anselm Horn (Tue Oct 05 2021 - 01:51:03 PDT)
- Song, Lin (Mon Oct 04 2021 - 21:33:34 PDT)
- Gao Zhenting (Mon Oct 04 2021 - 20:32:48 PDT)
[AMBER] How to turn H-bonding point charges
- Matthew Guberman-Pfeffer (Mon Oct 11 2021 - 09:23:41 PDT)
- Carlos Simmerling (Mon Oct 11 2021 - 07:18:40 PDT)
- Matthew Guberman-Pfeffer (Mon Oct 11 2021 - 05:59:05 PDT)
[AMBER] Ligand is unstable in simulations
- David A Case (Mon Oct 04 2021 - 07:06:09 PDT)
- Midhun K Madhu (Mon Oct 04 2021 - 05:10:24 PDT)
[AMBER] LINMIN ERROR
- David A Case (Sun Oct 24 2021 - 13:12:54 PDT)
- Sumon Naskar (Sat Oct 23 2021 - 13:07:25 PDT)
[AMBER] Maximizing GROMACS Throughput with Multiple Simulations per GPU Using MPS and MIG
- James Kress (Fri Oct 22 2021 - 11:40:40 PDT)
- Jason Hogrefe (Fri Oct 22 2021 - 10:07:01 PDT)
- Matias Machado (Fri Oct 22 2021 - 08:35:56 PDT)
- James Kress (Thu Oct 21 2021 - 13:29:16 PDT)
[AMBER] Meaning of 3D-RISM output files?
- tluchko (Mon Oct 18 2021 - 10:52:10 PDT)
- Gao Zhenting (Sun Oct 17 2021 - 03:42:43 PDT)
[AMBER] mm_pbsa and MMPBSA.py
- zmatovic.kg.ac.rs (Thu Oct 28 2021 - 10:06:16 PDT)
- Dr. Anselm Horn (Thu Oct 28 2021 - 08:21:16 PDT)
- zmatovic.kg.ac.rs (Thu Oct 28 2021 - 06:57:15 PDT)
[AMBER] MMGBSA error help
- Debarati DasGupta (Fri Oct 15 2021 - 06:50:37 PDT)
[AMBER] MMPBSA (Unable to read script file because of error: invalid option argument "-O")
- Rana Rehan Khalid (Sat Oct 30 2021 - 15:40:00 PDT)
[AMBER] Multiple Replicate Trajectories
- Li,Haoxi (Thu Oct 28 2021 - 08:21:17 PDT)
[AMBER] Mutation by pdb4amber
- mohamed marzouk (Fri Oct 15 2021 - 05:41:50 PDT)
[AMBER] On Ion Distribution and "Replicates"
- Robert Molt (Mon Oct 11 2021 - 07:26:39 PDT)
[AMBER] Organometallic RESP charge derivation for use with AmberTools
- Vaibhav Dixit (Tue Oct 26 2021 - 18:34:16 PDT)
- Sam Walsworth (Researcher) (Tue Oct 26 2021 - 11:58:00 PDT)
[AMBER] parameters for ions
- Małgorzata Kogut (Thu Oct 07 2021 - 00:14:01 PDT)
[AMBER] parameters for ions in Amber
- David A Case (Thu Oct 07 2021 - 04:39:04 PDT)
- Małgorzata Kogut (Wed Oct 06 2021 - 23:57:58 PDT)
[AMBER] Parameters for non-standard residues
- Dr. Anselm Horn (Thu Oct 21 2021 - 07:21:57 PDT)
- David A Case (Wed Oct 20 2021 - 09:22:50 PDT)
- Nagar, Hemant (Tue Oct 19 2021 - 13:44:59 PDT)
- David A Case (Mon Oct 18 2021 - 13:54:06 PDT)
- Carlos Simmerling (Mon Oct 18 2021 - 13:51:40 PDT)
- Nagar, Hemant (Mon Oct 18 2021 - 13:07:04 PDT)
[AMBER] parmed for 12-6-4 LJ (Geng Dong)
- Pengfei Li (Sat Oct 02 2021 - 17:47:19 PDT)
[AMBER] parmed for two atom type with the same LJ parameters
- Jason Swails (Thu Oct 14 2021 - 13:29:14 PDT)
- Song, Lin (Thu Oct 14 2021 - 08:44:21 PDT)
- Qinghua Liao (Thu Oct 14 2021 - 05:27:33 PDT)
[AMBER] Postdoctoral fellowship Computational Drug Discovery
- Marawan Hussien (Fri Oct 01 2021 - 10:50:10 PDT)
[AMBER] Problem measuring angle in CPPTRAJ
- Matthew Guberman-Pfeffer (Sat Oct 30 2021 - 13:14:13 PDT)
[AMBER] Problems with mm_pbsa tests
- David A Case (Fri Oct 15 2021 - 05:01:30 PDT)
- Ravi Abrol (Thu Oct 14 2021 - 23:12:35 PDT)
- David A Case (Thu Oct 14 2021 - 06:13:50 PDT)
[AMBER] Protein-protein binding free energy MMPBSA
- David A Case (Thu Oct 14 2021 - 18:26:58 PDT)
- Rana Rehan Khalid (Thu Oct 14 2021 - 15:43:43 PDT)
[AMBER] Query regarding missing oxygen atom in RNA sequence
- Saikat Pal (Wed Oct 20 2021 - 15:10:26 PDT)
[AMBER] Query regarding not integral charge in RNA
- David A Case (Thu Oct 21 2021 - 15:46:13 PDT)
- Saikat Pal (Thu Oct 21 2021 - 12:24:34 PDT)
- David A Case (Thu Oct 21 2021 - 11:17:23 PDT)
- Saikat Pal (Thu Oct 21 2021 - 08:44:38 PDT)
[AMBER] Query regarding ZAFF Modeling Tutorial
- Maria Nagan (Tue Oct 26 2021 - 17:06:41 PDT)
- Saikat Pal (Fri Oct 22 2021 - 14:58:03 PDT)
[AMBER] Question of Amber_ Sasaki
- Shiho Ohno (Wed Oct 06 2021 - 17:08:07 PDT)
- David A Case (Mon Oct 04 2021 - 05:26:40 PDT)
- Shiho Ohno (Mon Oct 04 2021 - 01:34:16 PDT)
[AMBER] reasonable GIST griddim values
- Daniel Roe (Mon Oct 25 2021 - 07:38:11 PDT)
- Christian Seitz (Sun Oct 24 2021 - 13:27:07 PDT)
[AMBER] Reg: Cpptraj-Hierarchical Agglomerative Reference paper for methodology and result analysis
- Lara rajam (Mon Oct 25 2021 - 18:01:23 PDT)
[AMBER] Regarding Amber20 installation
- David A Case (Fri Oct 29 2021 - 14:22:16 PDT)
- Dow Hurst (Thu Oct 28 2021 - 21:46:27 PDT)
- Rajarshi Roy (Wed Oct 27 2021 - 21:36:01 PDT)
- David A Case (Wed Oct 27 2021 - 14:19:31 PDT)
- Rajarshi Roy (Tue Oct 26 2021 - 06:59:33 PDT)
[AMBER] Regarding area calculation of protein cavity
- Carlos Simmerling (Thu Oct 28 2021 - 09:41:38 PDT)
- Athena N (Thu Oct 28 2021 - 07:57:56 PDT)
- Dr. Anselm Horn (Thu Oct 28 2021 - 04:19:47 PDT)
- Athena N (Thu Oct 28 2021 - 04:12:15 PDT)
[AMBER] Regarding entropy calculations in MMPBSA.py when enthalpy is either from GBSA or PBSA?
- David A Case (Sun Oct 17 2021 - 03:34:32 PDT)
- Liao (Sat Oct 16 2021 - 09:43:52 PDT)
[AMBER] Regarding xleap error
- Dr. Anselm Horn (Wed Oct 06 2021 - 08:53:12 PDT)
- Archana (Wed Oct 06 2021 - 08:17:25 PDT)
[AMBER] Restart/Reference file for targeted MD
- Rafał Madaj (Tue Oct 05 2021 - 06:01:25 PDT)
- Daniel Roe (Tue Oct 05 2021 - 05:47:08 PDT)
[AMBER] Restraining ligand for TI
- Delwakkada Liyanage, Senal Dinuka (Tue Oct 19 2021 - 15:34:13 PDT)
[AMBER] Restraining the distance between two groups of residues?
- Gustavo Seabra (Fri Oct 08 2021 - 11:34:46 PDT)
[AMBER] Restraint COM between two proteins
- Mohamed Aboelnga (Tue Oct 05 2021 - 06:19:23 PDT)
[AMBER] RMSD of residues within 3A of ligand
- Sadaf Rani (Fri Oct 22 2021 - 06:56:41 PDT)
[AMBER] Rotation Matrix
- mohamed marzouk (Thu Oct 21 2021 - 16:55:25 PDT)
- mohamed marzouk (Sat Oct 16 2021 - 05:00:02 PDT)
- David A Case (Sat Oct 16 2021 - 04:40:51 PDT)
- mohamed marzouk (Sat Oct 16 2021 - 03:09:05 PDT)
- mohamed marzouk (Sun Oct 10 2021 - 05:36:08 PDT)
- David A Case (Sun Oct 10 2021 - 05:29:21 PDT)
- mohamed marzouk (Sat Oct 09 2021 - 18:58:13 PDT)
[AMBER] Several postdoctoral positions available in EU
- Jan Brezovsky (Mon Oct 25 2021 - 09:19:37 PDT)
[AMBER] Symmetrical voids during heating stage
- Thomas Cheatham (Wed Oct 06 2021 - 21:22:00 PDT)
- Thomas Cheatham (Wed Oct 06 2021 - 20:48:50 PDT)
- Nagar, Hemant (Wed Oct 06 2021 - 16:38:09 PDT)
[AMBER] The silver ion parameter
- nali (Tue Oct 05 2021 - 10:01:14 PDT)
[AMBER] TI for DG when only cofactor charge changes
- Vaibhav Dixit (Sat Oct 02 2021 - 23:21:35 PDT)
[AMBER] Tohoku Medical and Pharmaceutical University Sasaki　It's resolved
- Shiho Ohno (Wed Oct 06 2021 - 17:45:36 PDT)
[AMBER] trajectory of mutation generation (Geng Dong)
- 东庚 (Sun Oct 17 2021 - 02:32:48 PDT)
[AMBER] unable to get response from mailing list
- Carlos Simmerling (Sat Oct 30 2021 - 06:29:41 PDT)
- David A Case (Sat Oct 30 2021 - 06:11:01 PDT)
- Sadaf Rani (Fri Oct 29 2021 - 19:20:21 PDT)
[AMBER] Unwanted water protein interaction
- mohamed marzouk (Sun Oct 17 2021 - 03:34:20 PDT)
- David A Case (Sun Oct 17 2021 - 03:30:08 PDT)
- mohamed marzouk (Sat Oct 16 2021 - 08:15:04 PDT)
[AMBER] VDWAALS = ************* in minimization
- Daniel Roe (Thu Oct 14 2021 - 07:32:33 PDT)
- Carlos Simmerling (Sat Oct 09 2021 - 15:22:03 PDT)
- Ben Roberts (Sat Oct 09 2021 - 11:13:41 PDT)
- Sadaf Rani (Sat Oct 09 2021 - 10:59:56 PDT)
[AMBER] weired Ligand conformation during simulation
- David A Case (Sun Oct 31 2021 - 13:22:55 PDT)
- Sadaf Rani (Sun Oct 31 2021 - 11:38:09 PDT)
- David A Case (Sat Oct 30 2021 - 06:06:45 PDT)
- Sadaf Rani (Fri Oct 29 2021 - 19:10:22 PDT)
[AMBER] What is the default value of tishake
- Suitian Lai (Mon Oct 18 2021 - 07:48:19 PDT)
[AMBER] Wrong Angel Given by Cpptraj?
- Matthew Guberman-Pfeffer (Fri Oct 29 2021 - 03:38:16 PDT)
[AMBER] ZAFF Simulation Error
- Maria Nagan (Tue Oct 26 2021 - 17:11:26 PDT)
- Daniel Hall (Thu Oct 21 2021 - 13:48:27 PDT)
[AMBER] Zn sim
- Cato, Lee (Tue Oct 05 2021 - 07:05:10 PDT)
[AMBER] {SPAM?} trajectory of mutation generation (Geng Dong)
- Jason Swails (Fri Oct 29 2021 - 06:27:25 PDT)
- Matthew Guberman-Pfeffer (Sun Oct 17 2021 - 05:51:58 PDT)

Amber Archive Oct 2021 by subject