Archana,
please ensure that you sourced the amber.sh or amber.csh file (in the
installation directory, normally $AMBERHOME), which updates all
necessary environment variables including your PATH.
After that all Amber executables should be found.
And no, VMD is not strictly necessary, any biomolecular viewing program
with similar capabilities will do. However, VMD is often used within the
Amber community. Please see the VMD website for download and
installation notes.
Best regards,
Anselm
PD Dr.rer.nat.
Bioinformatik | NHR.FAU
Friedrich-Alexander-Universität Erlangen-Nürnberg
Germany
Am 06.10.2021 um 17:17 schrieb Archana:
> Dear Sir,
> After installation, I started practice from tutorial B0 and when gave xleap command it gives output error " xleap command not found". I am a beginner in this. Please sir, guide me, how to locate xleap and run.
>
> Sir, Is it necessary to install VMD for further? If yes then, please guide in this regard also.
>
> Thank you Sir.
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Received on Wed Oct 06 2021 - 09:00:02 PDT
