Re: [AMBER] How to minimize a pdb format file in Amber 16

From: priya murugan <priyamurugan943.gmail.com>
Date: Fri, 29 Oct 2021 08:00:00 +0800

Thank you v.much Dr Hector. Really appreciate your suggestion.


Regards

*PRIYA MURUGAN *



On Thu, Oct 28, 2021 at 8:36 PM Hector A. Baldoni <hbaldoni.unsl.edu.ar>
wrote:

> Hi,
>
> This may help you: http://archive.ambermd.org/201506/0097.html
>
> Greeting,
> Hector
>
>
> El 2021-10-28 01:52, priya murugan escribió:
> > Hello researchers,
> >
> > Can some suggest to me how to minimize the PDB format file in Amber 16?
> > Before this, I've used Amber 16 to minimize my .CRD format file. But
> > when I
> > tried to minimize my representative structure in PDB format which I got
> > from clustering analysis, but unable to run minimization.
> >
> > Kindly let me your thoughts and if there is any other option other than
> > AMBER kindly let me know.
> >
> > Thanks & Regards
> >
> > *PRIYA MURUGAN *
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
> --
> --------------------------------------
> Dr. Hector A. Baldoni
> Profesor Titular (FQByF-UNSL)
> Investigador Adjunto (IMASL-CONICET)
> Area de Quimica General e Inorganica
> Universidad Nacional de San Luis
> Chacabuco 917 (D5700BWS)
> San Luis - Argentina
> hbaldoni at unsl dot edu dot ar
> Tel.:+54-(0)266-4520300 ext. 6157
> --------------------------------------
> First things first. But not necessarily in such order.
>
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Oct 28 2021 - 17:30:02 PDT
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