Dear Amber's users,
I tried to install AmberTools21 using Option 1 in the instruction manual
from the website
https://ambermd.org/GetAmber.php#ambertools .
I use Ubuntu 21.10, cmake 3.22.0-rcc, gcc-9.4.0 ,
However, at the end of the installation process the error appears. Please
see below.
Maybe you know how to solve this problem?
Best regards,
Victor
#################################################################
[ 94%] Building C object
AmberTools/src/leap/src/leap/CMakeFiles/leap_common_obj.dir/getline.c.o
/home/victor/src/amber20_src/AmberTools/src/leap/src/leap/getline.c:117:17:
error: conflicting types for ‘write’
117 | extern int write();
| ^~~~~
In file included from /usr/include/x86_64-linux-gnu/bits/sigstksz.h:24,
from /usr/include/signal.h:328,
from /home/victor/src/amber20_src/AmberTools/src/leap/src/leap/getline.c:36:
/usr/include/unistd.h:378:16: note: previous declaration of ‘write’ was here
378 | extern ssize_t write (int __fd, const void *__buf, size_t __n) __wur
| ^~~~~
/home/victor/src/amber20_src/AmberTools/src/leap/src/leap/getline.c:133:17:
error: conflicting types for ‘read’
133 | extern int read();
| ^~~~
In file included from /usr/include/unistd.h:1200,
from /usr/include/x86_64-linux-gnu/bits/sigstksz.h:24,
from /usr/include/signal.h:328,
from /home/victor/src/amber20_src/AmberTools/src/leap/src/leap/getline.c:36:
/usr/include/x86_64-linux-gnu/bits/unistd.h:36:1: note: previous definition
of ‘read’ was here
36 | read (int __fd, void *__buf, size_t __nbytes)
| ^~~~
/home/victor/src/amber20_src/AmberTools/src/leap/src/leap/getline.c: In
function ‘hist_save’:
/home/victor/src/amber20_src/AmberTools/src/leap/src/leap/getline.c:920:25:
warning: ‘malloc’ argument 1 type is ‘int’ where ‘long unsigned int’ is
expected in a call to built-in function declared without prototype
[-Wbuiltin-declaration-mismatch]
920 | if ((s = malloc(len)) != 0) {
| ^~~
/home/victor/src/amber20_src/AmberTools/src/leap/src/leap/getline.c:46:17:
note: built-in ‘malloc’ declared here
46 | extern void *malloc();
| ^~~~~~
/home/victor/src/amber20_src/AmberTools/src/leap/src/leap/getline.c:925:28:
warning: ‘malloc’ argument 1 type is ‘int’ where ‘long unsigned int’ is
expected in a call to built-in function declared without prototype
[-Wbuiltin-declaration-mismatch]
925 | if ((s = malloc(len+1)) != 0) {
| ~~~^~
/home/victor/src/amber20_src/AmberTools/src/leap/src/leap/getline.c:46:17:
note: built-in ‘malloc’ declared here
46 | extern void *malloc();
| ^~~~~~
make[2]: ***
[AmberTools/src/leap/src/leap/CMakeFiles/leap_common_obj.dir/build.make:132:
AmberTools/src/leap/src/leap/CMakeFiles/leap_common_obj.dir/getline.c.o]
Ошибка 1
make[1]: *** [CMakeFiles/Makefile2:6295:
AmberTools/src/leap/src/leap/CMakeFiles/leap_common_obj.dir/all] Ошибка 2
make: *** [Makefile:156: all] Ошибка 2
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Received on Sat Oct 23 2021 - 06:00:02 PDT
