> On Oct 4, 2021, at 11:32 PM, Gao Zhenting <zhentgpicasa.gmail.com> wrote:
>
> Dear Amber users,
>
> After solvating the protein into a box, the original coordinates of the
> protein are changed. Is there any way to superpose the solvated system to
> the original pdb structure, so that it is easier to compare the trajectory
> with the original pdb conformation?
>
> Regards
> Zhenting
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