[AMBER] Unwanted water protein interaction

From: mohamed marzouk <mohamedmarzoukphysics.gmail.com>
Date: Sat, 16 Oct 2021 15:15:04 +0000

Hello,
During preparation of top file by tleap for protein/DNA complex some fat water molecules interact with protein!!! Attached photos for vmd and pdb file
Any expected reason for that ?!
If any solution to this problem ?!
[Image.jpeg][Image.jpeg]
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Received on Sat Oct 16 2021 - 08:30:02 PDT
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