Amber Archive Dec 2018: by subject

[AMBER] ACE
- Bill Ross (Thu Dec 20 2018 - 03:05:42 PST)
- David Cerutti (Thu Dec 20 2018 - 02:44:02 PST)
- Bill Ross (Thu Dec 20 2018 - 02:39:23 PST)
- Keiran Corbett (Thu Dec 20 2018 - 00:22:58 PST)
[AMBER] Acpype related problem : topology for GROMACS
- Seketoulie Keretsu (Mon Dec 17 2018 - 08:04:12 PST)
- Alan (Mon Dec 17 2018 - 07:26:36 PST)
- Seketoulie Keretsu (Mon Dec 17 2018 - 05:20:09 PST)
- David A Case (Mon Dec 17 2018 - 05:13:01 PST)
- Alan (Mon Dec 17 2018 - 01:24:12 PST)
- Seketoulie Keretsu (Sun Dec 16 2018 - 21:11:33 PST)
- Bill Ross (Sun Dec 16 2018 - 18:48:27 PST)
- Seketoulie Keretsu (Sun Dec 16 2018 - 16:31:42 PST)
- Bill Ross (Sun Dec 16 2018 - 06:10:07 PST)
- Seketoulie Keretsu (Sun Dec 16 2018 - 05:58:08 PST)
[AMBER] All Energy Calculations in AMBER18.
- Daniel Roe (Fri Dec 28 2018 - 06:21:01 PST)
- DHEERAJ CHITARA (Tue Dec 25 2018 - 05:58:19 PST)
[AMBER] amber12 install problem
- David A Case (Tue Dec 11 2018 - 04:41:21 PST)
- Qasim Pars (Mon Dec 10 2018 - 11:46:57 PST)
[AMBER] AMBER16 re-installation problem
- David A Case (Mon Dec 17 2018 - 05:31:09 PST)
- ilhan.yavuz (Mon Dec 17 2018 - 01:06:30 PST)
[AMBER] Amber18 compilation error on a Linux CPU cluster
- Daniel Roe (Fri Dec 28 2018 - 06:24:47 PST)
- Sundar (Mon Dec 24 2018 - 17:16:49 PST)
- Bill Ross (Sun Dec 23 2018 - 11:17:50 PST)
- Sundar (Sun Dec 23 2018 - 10:40:59 PST)
- Sundar (Sat Dec 22 2018 - 20:21:07 PST)
- David A Case (Thu Dec 20 2018 - 04:54:07 PST)
- Sundar (Wed Dec 19 2018 - 21:47:23 PST)
[AMBER] AMBER18 on RTX 2080Ti
- Mlynsky Vojtech (Fri Dec 21 2018 - 07:25:43 PST)
- Pratul Agarwal (Tue Dec 18 2018 - 09:43:59 PST)
- Rui Sun (Tue Dec 18 2018 - 02:56:02 PST)
- David Cerutti (Mon Dec 17 2018 - 19:37:48 PST)
- Ross Walker (Mon Dec 17 2018 - 17:55:22 PST)
- Pratul Agarwal (Mon Dec 17 2018 - 17:16:31 PST)
- Rui Sun (Mon Dec 17 2018 - 16:46:59 PST)
- David Cerutti (Fri Dec 14 2018 - 18:01:31 PST)
- Pratul Agarwal (Fri Dec 14 2018 - 15:29:57 PST)
- David Cerutti (Fri Dec 14 2018 - 15:09:21 PST)
- Rui Sun (Fri Dec 14 2018 - 14:53:23 PST)
[AMBER] AMBER18 Update Fail (AmberTools Update.10)
- David Case (Sat Dec 08 2018 - 08:09:00 PST)
- Rui Sun (Fri Dec 07 2018 - 11:28:56 PST)
- Daniel Roe (Fri Dec 07 2018 - 05:21:33 PST)
- Seketoulie Keretsu (Fri Dec 07 2018 - 03:04:19 PST)
- Rui Sun (Fri Dec 07 2018 - 01:31:50 PST)
[AMBER] Ambiguous interfaces in generic interface
- David Case (Wed Dec 05 2018 - 18:14:38 PST)
- Pedro H. Oliveira (Wed Dec 05 2018 - 13:36:24 PST)
[AMBER] amd running error
- Bill Ross (Mon Dec 17 2018 - 23:52:38 PST)
- Gustaf Olsson (Mon Dec 17 2018 - 23:25:57 PST)
- Nisha Amarnath Jonniya (Mon Dec 17 2018 - 22:01:20 PST)
[AMBER] Antechamber give a different total charge from net charge that I specified by -nc
- Jinfeng Huang (Tue Dec 04 2018 - 10:42:41 PST)
[AMBER] Axis of a helix as a collective variable
- Pratul Agarwal (Thu Dec 20 2018 - 21:35:17 PST)
- Akshay Prabhakant (Thu Dec 20 2018 - 19:24:06 PST)
- Pratul Agarwal (Thu Dec 20 2018 - 15:19:18 PST)
- Wesley Michael Botello-Smith (Thu Dec 20 2018 - 15:11:25 PST)
- Pratul Agarwal (Thu Dec 20 2018 - 12:23:53 PST)
- Osman, Roman (Thu Dec 20 2018 - 10:54:03 PST)
- Wesley Michael Botello-Smith (Thu Dec 20 2018 - 10:37:24 PST)
- Akshay Prabhakant (Thu Dec 20 2018 - 09:30:14 PST)
- Akshay Prabhakant (Thu Dec 20 2018 - 09:13:26 PST)
[AMBER] Backbone position restraints as a group
- lorenaz (Thu Dec 06 2018 - 06:33:07 PST)
- David A Case (Thu Dec 06 2018 - 06:12:04 PST)
- lorenaz (Wed Dec 05 2018 - 00:49:57 PST)
[AMBER] Calculate the conduct rate from PMF
- David A Case (Mon Dec 10 2018 - 10:41:29 PST)
- Meng Wu (Thu Dec 06 2018 - 18:51:13 PST)
[AMBER] Calculation of Hbond energy
- David Case (Tue Dec 25 2018 - 14:42:48 PST)
- MOHD HOMAIDUR RAHMAN (Tue Dec 25 2018 - 07:33:58 PST)
[AMBER] Can a Nudged elastic band (NEB) job run on a single GPU?
- Ghoreishi, Delaram (Fri Dec 07 2018 - 13:10:03 PST)
- Ghoreishi, Delaram (Fri Dec 07 2018 - 11:49:08 PST)
- Li, Dailin (Fri Dec 07 2018 - 11:11:49 PST)
[AMBER] cation-pi and amber FF
- Sundar (Wed Dec 19 2018 - 21:36:45 PST)
[AMBER] compilation error AMBER16
- Seibold, Steve Allan (Fri Dec 28 2018 - 07:52:56 PST)
- David Case (Thu Dec 27 2018 - 12:56:06 PST)
- Seibold, Steve Allan (Thu Dec 27 2018 - 11:31:20 PST)
[AMBER] constant dieletcric
- Daniel Roe (Fri Dec 28 2018 - 06:06:51 PST)
- Farial Tavakoli (Tue Dec 25 2018 - 05:05:23 PST)
[AMBER] cpin file format issue in production run
- Cruzeiro,Vinicius Wilian D (Fri Dec 21 2018 - 06:58:25 PST)
- Manju Sah (Fri Dec 21 2018 - 03:45:32 PST)
[AMBER] cpptraj error
- Rajbinder Kaur Virk (Tue Dec 04 2018 - 01:18:29 PST)
- Daniel Roe (Mon Dec 03 2018 - 11:23:50 PST)
- Rajbinder Kaur Virk (Sun Dec 02 2018 - 22:16:28 PST)
[AMBER] Cpptraj usage
- Daniel Roe (Mon Dec 10 2018 - 06:34:28 PST)
- Chhaya Singh (Tue Dec 04 2018 - 14:16:01 PST)
[AMBER] CUDA bootstrap site
- Bill Ross (Wed Dec 19 2018 - 20:05:59 PST)
[AMBER] CUDA test failure
- Asma Abro (Mon Dec 17 2018 - 06:33:42 PST)
- Pratul Agarwal (Mon Dec 17 2018 - 06:10:09 PST)
- David A Case (Mon Dec 17 2018 - 05:21:33 PST)
- Bill Ross (Sun Dec 16 2018 - 23:42:35 PST)
- Asma Abro (Sun Dec 16 2018 - 23:22:47 PST)
[AMBER] Dear AMBER members,
- David Case (Sun Dec 09 2018 - 05:39:56 PST)
- 대학원/일반대학원 생명과학부 (Sat Dec 08 2018 - 07:46:31 PST)
[AMBER] Delta G pb and Delta G Sa
- Wesley Michael Botello-Smith (Mon Dec 03 2018 - 10:19:41 PST)
- Keiran Corbett (Mon Dec 03 2018 - 08:00:11 PST)
[AMBER] DOi for Amber 2017
- David A Case (Mon Dec 17 2018 - 05:13:28 PST)
- David Sáez (Sun Dec 16 2018 - 12:30:41 PST)
[AMBER] error on equilibriation
- Pratul Agarwal (Tue Dec 18 2018 - 08:09:00 PST)
- Akshay Prabhakant (Tue Dec 18 2018 - 07:55:10 PST)
[AMBER] Error when installing AMBER16
- Bellesis, Andrew G (Thu Dec 13 2018 - 09:55:38 PST)
[AMBER] Extracting PDBs every 'N" ns
- Daniel Roe (Mon Dec 03 2018 - 11:14:20 PST)
- Jag Silwal (Mon Dec 03 2018 - 02:25:11 PST)
- David Case (Sun Dec 02 2018 - 11:40:27 PST)
- Jag Silwal (Sun Dec 02 2018 - 07:16:15 PST)
[AMBER] FATAL Error: Atom does not have a type
- Bill Ross (Thu Dec 27 2018 - 04:07:32 PST)
- Mac Kevin Braza (Thu Dec 27 2018 - 02:58:26 PST)
- David Case (Wed Dec 26 2018 - 18:35:33 PST)
- Elvis Martis (Tue Dec 25 2018 - 20:57:22 PST)
- Mac Kevin Braza (Tue Dec 25 2018 - 20:36:55 PST)
[AMBER] Fatty acid ester parameter file
- andreas.tosstorff.cup.uni-muenchen.de (Mon Dec 10 2018 - 13:28:06 PST)
[AMBER] ff12pol in Amber 18
- Ray Luo (Thu Dec 20 2018 - 14:51:45 PST)
- Han, Jaebeom (Thu Dec 20 2018 - 12:37:34 PST)
[AMBER] Fwd: constant dieletcric
- Farial Tavakoli (Thu Dec 27 2018 - 22:15:25 PST)
[AMBER] Fwd: FATAL Error: Atom does not have a type
- Mac Kevin Braza (Tue Dec 25 2018 - 20:38:01 PST)
[AMBER] GBSA error
- Daniel Roe (Wed Dec 12 2018 - 08:45:20 PST)
- jacob wick (Tue Dec 11 2018 - 21:45:32 PST)
- jacob wick (Tue Dec 11 2018 - 00:49:15 PST)
[AMBER] GIST calculation on NAMD-generated trajectory
- Tom Kurtzman (Tue Dec 18 2018 - 10:26:27 PST)
- Daniel Roe (Thu Dec 13 2018 - 11:59:00 PST)
- Bin Sun (Thu Dec 13 2018 - 11:57:19 PST)
- Bin Sun (Thu Dec 13 2018 - 11:55:14 PST)
- Daniel Roe (Wed Dec 12 2018 - 17:40:08 PST)
- anthonycruzpr (Wed Dec 12 2018 - 15:42:11 PST)
- Daniel Roe (Wed Dec 12 2018 - 07:58:30 PST)
- Bin Sun (Tue Dec 11 2018 - 11:52:48 PST)
[AMBER] GPU download(upload) only a small subset of coordinates
- Ghoreishi, Delaram (Wed Dec 26 2018 - 10:22:41 PST)
- 张浩淼 (Wed Dec 26 2018 - 01:12:02 PST)
[AMBER] HMR 4fs error.
- David A Case (Mon Dec 31 2018 - 04:49:22 PST)
- M RCC (Mon Dec 31 2018 - 02:06:51 PST)
[AMBER] How to add ff99sb*ildn?
- Leena Aggarwal (Fri Dec 21 2018 - 20:51:50 PST)
- Vlad Cojocaru (Fri Dec 21 2018 - 07:43:22 PST)
- Midhun K Madhu (Fri Dec 21 2018 - 07:22:33 PST)
[AMBER] How to get the jac.restrt？
- 王茜茜 (Tue Dec 11 2018 - 06:14:24 PST)
- David A Case (Tue Dec 11 2018 - 04:46:36 PST)
- 王茜茜 (Tue Dec 11 2018 - 01:08:18 PST)
- 王茜茜 (Mon Dec 10 2018 - 22:53:26 PST)
- 王茜茜 (Mon Dec 10 2018 - 19:37:04 PST)
[AMBER] Include bound ions as part of the receptor molecule in MMPBSA.py
- Nanjie Deng (Thu Dec 06 2018 - 19:44:42 PST)
- Christina Bergonzo (Thu Dec 06 2018 - 05:34:21 PST)
- Keiran Corbett (Thu Dec 06 2018 - 00:11:17 PST)
- Nanjie Deng (Wed Dec 05 2018 - 13:27:11 PST)
[AMBER] info on trajectory files
- Dr. Anselm Horn (Wed Dec 19 2018 - 02:12:01 PST)
- Akshay Prabhakant (Wed Dec 19 2018 - 01:14:59 PST)
[AMBER] is acpype compatible with amber 2018?? parmchk2 and not parmchk available
- Seketoulie Keretsu (Sun Dec 16 2018 - 21:07:04 PST)
[AMBER] lambda option in SEBOMD
- Margarita I. Bernal-Uruchurtu (Mon Dec 17 2018 - 05:15:38 PST)
[AMBER] ligand charges for md
- dhaval patel (Fri Dec 21 2018 - 21:23:04 PST)
- Fabian Glaser (Tue Dec 11 2018 - 08:33:08 PST)
- David Case (Sun Dec 09 2018 - 13:08:51 PST)
- Fabian Glaser (Sun Dec 09 2018 - 08:15:56 PST)
[AMBER] Linear Interaction Energy
- Daniel Roe (Mon Dec 03 2018 - 12:50:03 PST)
[AMBER] Lipid NMR order parameters
- Daniel Roe (Fri Dec 21 2018 - 11:46:00 PST)
- Baker, Joseph (Sun Dec 16 2018 - 16:59:48 PST)
[AMBER] MCPB.py Modelling Question
- Hunter Wilson (Sat Dec 29 2018 - 14:17:11 PST)
- Pengfei Li (Fri Dec 21 2018 - 14:21:27 PST)
- Hunter Wilson (Sun Dec 16 2018 - 12:48:07 PST)
[AMBER] MCPB.py problems For atom (.R<AL1 380>.A<CL2 1>) could not find vdW (or other) parameters for type (Y1)
- Pengfei Li (Sat Dec 08 2018 - 18:34:00 PST)
- Jinfeng Chen (Mon Dec 03 2018 - 03:42:29 PST)
[AMBER] MD Analysis - Consistency
- Daniel Roe (Fri Dec 28 2018 - 06:33:39 PST)
- senal dinuka (Sat Dec 22 2018 - 22:10:44 PST)
[AMBER] Minimisation and periodic boundaries
- Daniel Roe (Mon Dec 10 2018 - 06:37:06 PST)
- Stejskal, Lenka (Wed Dec 05 2018 - 08:11:44 PST)
[AMBER] Minimisation and periodic boundaries.
- Daniel Roe (Mon Dec 03 2018 - 12:21:16 PST)
[AMBER] minimization difficulties
- David A Case (Mon Dec 03 2018 - 07:05:32 PST)
- Bill Ross (Mon Dec 03 2018 - 03:10:05 PST)
- Kimia Sh (Mon Dec 03 2018 - 02:46:16 PST)
[AMBER] Missing gaff parameters for epoxy ring
- Chang Woon Jang (Tue Dec 18 2018 - 09:29:23 PST)
- David A Case (Tue Dec 18 2018 - 05:21:49 PST)
- Chang Woon Jang (Mon Dec 17 2018 - 15:07:09 PST)
[AMBER] MMPBSA
- Farial Tavakoli (Fri Dec 14 2018 - 07:26:48 PST)
- Farial Tavakoli (Thu Dec 13 2018 - 08:59:04 PST)
[AMBER] mpi
- David A Case (Fri Dec 21 2018 - 05:57:34 PST)
- Elvis Martis (Thu Dec 20 2018 - 22:08:08 PST)
- Charu Sharma (JRF) (Thu Dec 20 2018 - 22:04:44 PST)
[AMBER] multiconformational respgen with fixed charges and gcc 4.8
- Stephan Schott (Sun Dec 30 2018 - 16:38:16 PST)
- David Case (Sun Dec 30 2018 - 06:06:28 PST)
- Stephan Schott (Sat Dec 22 2018 - 15:39:56 PST)
[AMBER] numpy related problem in amber
- Seketoulie Keretsu (Fri Dec 07 2018 - 03:05:46 PST)
- Hai Nguyen (Thu Dec 06 2018 - 23:30:28 PST)
- Seketoulie Keretsu (Thu Dec 06 2018 - 22:02:39 PST)
- David A Case (Thu Dec 06 2018 - 06:01:57 PST)
- Elvis Martis (Wed Dec 05 2018 - 20:52:32 PST)
- Seketoulie Keretsu (Wed Dec 05 2018 - 20:05:22 PST)
[AMBER] Obtaining contact maps with cpptraj
- Alex Spasic (Tue Dec 04 2018 - 12:25:22 PST)
- Daniel Roe (Mon Dec 03 2018 - 12:14:13 PST)
[AMBER] Obtaining necessary *.top for MMPBSA.py
- Qinghua Liao (Mon Dec 31 2018 - 07:12:16 PST)
- Sundar (Mon Dec 31 2018 - 06:08:46 PST)
[AMBER] Problem running tiMerge (parmed)
- Wesley Michael Botello-Smith (Fri Dec 21 2018 - 09:15:47 PST)
[AMBER] Problems calculating self diffusion coefficient of water
- Lucas Bandeira (Sat Dec 22 2018 - 05:30:37 PST)
- Daniel Roe (Fri Dec 21 2018 - 12:04:39 PST)
- Tom Kurtzman (Thu Dec 20 2018 - 05:13:30 PST)
- Lucas Bandeira (Thu Dec 20 2018 - 02:21:04 PST)
- Saeed Izadi (Wed Dec 19 2018 - 12:52:06 PST)
- Lucas Bandeira (Wed Dec 19 2018 - 09:13:07 PST)
[AMBER] Problems modifing box lengths in a .rst file.
- Lucas Bandeira (Wed Dec 19 2018 - 07:25:34 PST)
- David Cerutti (Tue Dec 18 2018 - 09:44:56 PST)
- Daniel Roe (Tue Dec 18 2018 - 09:18:14 PST)
- Lucas Bandeira (Tue Dec 18 2018 - 07:29:31 PST)
- David A Case (Tue Dec 18 2018 - 05:18:52 PST)
- Daniel Roe (Mon Dec 17 2018 - 10:59:54 PST)
- Lucas Bandeira (Mon Dec 17 2018 - 10:18:00 PST)
- Daniel Roe (Mon Dec 17 2018 - 09:13:53 PST)
- Lucas Bandeira (Mon Dec 17 2018 - 08:45:46 PST)
- Lucas Bandeira (Mon Dec 17 2018 - 08:43:04 PST)
[AMBER] Problems with installation on Mac with Mojave. (cpptraj??)
- Gustaf Olsson (Mon Dec 17 2018 - 06:21:04 PST)
- David A Case (Tue Dec 11 2018 - 10:31:15 PST)
- Gustaf Olsson (Tue Dec 11 2018 - 05:41:57 PST)
- Margarita I. Bernal-Uruchurtu (Tue Dec 11 2018 - 05:35:29 PST)
- Margarita I. Bernal-Uruchurtu (Tue Dec 11 2018 - 05:26:28 PST)
- Gustaf Olsson (Mon Dec 10 2018 - 04:32:36 PST)
- Bill Ross (Mon Dec 10 2018 - 03:22:59 PST)
- Margarita I. Bernal-Uruchurtu (Mon Dec 10 2018 - 03:18:10 PST)
[AMBER] PSF file generation for heme and hydrogen peroxide
- David A Case (Thu Dec 13 2018 - 05:25:10 PST)
- 대학원/일반대학원 생명과학부 (Wed Dec 12 2018 - 18:37:09 PST)
[AMBER] Ptraj Command not found.
- Daniel Roe (Mon Dec 10 2018 - 06:04:30 PST)
- Pratul Agarwal (Sun Dec 09 2018 - 18:59:43 PST)
- Pavithra Support (Sun Dec 09 2018 - 18:37:37 PST)
[AMBER] q
- wangjianing_mail (Sat Dec 29 2018 - 04:19:24 PST)
[AMBER] QM/MM using Amber and Gaussian: Discrepancies between the QM energy from the gaussian output file and the energy reported in the mdout file as EXTERNESCF
- Goetz, Andreas (Wed Dec 05 2018 - 11:38:02 PST)
- Antoine MARION (Wed Dec 05 2018 - 02:16:12 PST)
- Eric Lang (Wed Dec 05 2018 - 01:55:43 PST)
- Goetz, Andreas (Tue Dec 04 2018 - 11:48:59 PST)
- Eric Lang (Tue Dec 04 2018 - 08:10:14 PST)
- Antoine MARION (Tue Dec 04 2018 - 06:22:56 PST)
- Eric Lang (Tue Dec 04 2018 - 03:36:20 PST)
[AMBER] Query regarding force field
- Rakesh Srivastava (Sat Dec 15 2018 - 22:46:30 PST)
- David Case (Sat Dec 15 2018 - 18:04:32 PST)
- Rakesh Srivastava (Sat Dec 15 2018 - 08:05:19 PST)
[AMBER] Query regarding the internal energy of protein.
- Leena Aggarwal (Mon Dec 17 2018 - 22:14:46 PST)
- Pratul Agarwal (Mon Dec 17 2018 - 07:37:58 PST)
- David A Case (Mon Dec 17 2018 - 05:34:56 PST)
- Leena Aggarwal (Mon Dec 17 2018 - 02:09:29 PST)
[AMBER] Reading Amber-generated NetCDF files using python
- Debostuti Ghoshdastidar (Tue Dec 11 2018 - 22:21:03 PST)
- Debostuti Ghoshdastidar (Tue Dec 11 2018 - 22:17:10 PST)
- David A Case (Tue Dec 11 2018 - 04:49:04 PST)
- Pratul Agarwal (Tue Dec 11 2018 - 04:33:57 PST)
- Debostuti Ghoshdastidar (Tue Dec 11 2018 - 04:22:39 PST)
- Pratul Agarwal (Tue Dec 11 2018 - 04:18:26 PST)
- Debostuti Ghoshdastidar (Mon Dec 10 2018 - 23:16:28 PST)
[AMBER] regarding G-quadraplex
- Bill Ross (Mon Dec 24 2018 - 05:12:36 PST)
- Charu Sharma (JRF) (Mon Dec 24 2018 - 04:31:18 PST)
[AMBER] regarding graph saving in JPEG
- David A Case (Wed Dec 05 2018 - 05:08:50 PST)
- Charu Sharma (JRF) (Wed Dec 05 2018 - 03:41:05 PST)
[AMBER] RESP charge calculation
- Aashish Bhatt (Mon Dec 10 2018 - 02:54:14 PST)
- Pengfei Li (Sat Dec 08 2018 - 18:27:17 PST)
[AMBER] resp charge fitting
- Thomas Fox (Fri Dec 14 2018 - 08:14:41 PST)
[AMBER] Ris: Extracting PDBs every 'N" ns
- Jag Silwal (Sun Dec 02 2018 - 07:54:44 PST)
- Casalini Tommaso (Sun Dec 02 2018 - 07:45:16 PST)
[AMBER] Ris: Ris: Extracting PDBs every 'N" ns
- Casalini Tommaso (Sun Dec 02 2018 - 08:02:03 PST)
[AMBER] RMSD vs RMSF
- Elvis Martis (Sun Dec 02 2018 - 20:51:24 PST)
- Xiaoyu Wang (Sun Dec 02 2018 - 16:28:45 PST)
[AMBER] sander: command not found
- Gustaf Olsson (Fri Dec 14 2018 - 05:14:10 PST)
- maya nair (Fri Dec 14 2018 - 04:54:50 PST)
[AMBER] Simulating a DNA Double helix with a mutated base pair
- David A Case (Tue Dec 18 2018 - 09:10:33 PST)
- Pratul Agarwal (Tue Dec 18 2018 - 09:07:55 PST)
- Anthony Bogetti (Tue Dec 18 2018 - 08:43:11 PST)
[AMBER] Size limit for amber
- Ibrahim M. Moustafa (Wed Dec 12 2018 - 10:42:14 PST)
- Daniel Roe (Wed Dec 12 2018 - 08:01:26 PST)
- Ibrahim M. Moustafa (Mon Dec 10 2018 - 10:44:41 PST)
- David A Case (Mon Dec 10 2018 - 10:34:30 PST)
- Ibrahim M. Moustafa (Mon Dec 10 2018 - 09:27:09 PST)
[AMBER] stapled peptide- PDB bond atom problem
- David A Case (Mon Dec 03 2018 - 10:17:07 PST)
- Angew Chemie (Mon Dec 03 2018 - 08:45:08 PST)
[AMBER] strange line between protein chains
- Pratul Agarwal (Fri Dec 14 2018 - 12:18:02 PST)
- Núbia Prates (Fri Dec 14 2018 - 04:54:40 PST)
- Bill Ross (Thu Dec 13 2018 - 10:25:55 PST)
- David A Case (Thu Dec 13 2018 - 09:45:30 PST)
- Pratul Agarwal (Thu Dec 13 2018 - 09:25:19 PST)
- Núbia Prates (Thu Dec 13 2018 - 07:20:42 PST)
[AMBER] Strange TIP3P solvent box - reference to the tutorial
- Kasprzak, Wojciech (NIH/NCI) [C] (Fri Dec 07 2018 - 05:25:54 PST)
[AMBER] Strange TIP3P solvent box distortions in Amber 18 with Mg2+
- David Cerutti (Thu Dec 06 2018 - 12:32:55 PST)
- Kasprzak, Wojciech (NIH/NCI) [C] (Thu Dec 06 2018 - 12:21:19 PST)
[AMBER] Strange TIP3P solvent box distortions in Amber 18 with Mg2+, but no MG
- David Case (Thu Dec 06 2018 - 19:02:59 PST)
- Kasprzak, Wojciech (NIH/NCI) [C] (Thu Dec 06 2018 - 13:56:21 PST)
[AMBER] Testing AMBER16 installation in parallel; possible bug in testing scripts
- David Case (Sat Dec 22 2018 - 14:22:54 PST)
- Pratul Agarwal (Fri Dec 21 2018 - 15:04:38 PST)
- Bellesis, Andrew G (Fri Dec 21 2018 - 12:56:46 PST)
[AMBER] thermostat on solvent
- David Case (Thu Dec 06 2018 - 19:04:46 PST)
[AMBER] TI method with combination of restrained MD in pmemd.cuda of AMBER18
- kegohda2kegohda.mx5.canvas.ne.jp (Fri Dec 28 2018 - 04:41:53 PST)
- David Case (Thu Dec 27 2018 - 06:25:54 PST)
- kegohda2kegohda.mx5.canvas.ne.jp (Wed Dec 26 2018 - 05:11:59 PST)
[AMBER] tleap does not add OXT when I load a crystal structure
- David A Case (Thu Dec 06 2018 - 05:57:53 PST)
- Thomas Evangelidis (Thu Dec 06 2018 - 02:09:31 PST)
- David Case (Wed Dec 05 2018 - 18:22:26 PST)
- David Cerutti (Wed Dec 05 2018 - 16:40:21 PST)
- Thomas Evangelidis (Wed Dec 05 2018 - 15:23:47 PST)
[AMBER] Too much comparisons failed for test_at_parallel
- David A Case (Tue Dec 18 2018 - 09:15:46 PST)
- changseo park (Tue Dec 18 2018 - 04:07:28 PST)
[AMBER] Total energy of glycan simulation is postive
- Rajarshi Roy (Sat Dec 22 2018 - 02:26:38 PST)
- David A Case (Fri Dec 21 2018 - 06:00:12 PST)
- Daniel Roe (Fri Dec 21 2018 - 05:49:55 PST)
- Rajarshi Roy (Fri Dec 21 2018 - 03:38:30 PST)
[AMBER] TUTORIAL
- Bill Ross (Mon Dec 03 2018 - 03:05:37 PST)
- Charu Sharma (JRF) (Mon Dec 03 2018 - 02:53:05 PST)
- Bill Ross (Mon Dec 03 2018 - 02:44:42 PST)
- Charu Sharma (JRF) (Mon Dec 03 2018 - 02:34:12 PST)
- Bill Ross (Mon Dec 03 2018 - 02:24:26 PST)
- Charu Sharma (JRF) (Mon Dec 03 2018 - 01:54:35 PST)
[AMBER] using sander in Xeon Phi
- Alfredo Quevedo (Wed Dec 12 2018 - 14:03:07 PST)
- David A Case (Thu Dec 13 2018 - 09:42:41 PST)
- Alfredo Quevedo (Wed Dec 12 2018 - 13:29:12 PST)
[AMBER] vdwmeth
- David Case (Sat Dec 08 2018 - 08:11:02 PST)
- Brian Radak (Sat Dec 08 2018 - 07:15:34 PST)
- Hosein Geraili Daronkola (Fri Dec 07 2018 - 14:46:04 PST)
- Brian Radak (Fri Dec 07 2018 - 11:44:59 PST)
- Hosein Geraili Daronkola (Fri Dec 07 2018 - 10:16:49 PST)
- Hosein Geraili Daronkola (Fri Dec 07 2018 - 07:55:42 PST)
- Hosein Geraili Daronkola (Fri Dec 07 2018 - 06:58:46 PST)
[AMBER] water-induced force on substrate along time
- Meng Wu (Wed Dec 05 2018 - 17:31:15 PST)
- Meng Wu (Wed Dec 05 2018 - 04:27:45 PST)
[AMBER] 答复: Can a Nudged elastic band (NEB) job run on a single GPU?
- Li, Dailin (Fri Dec 07 2018 - 14:16:11 PST)
- Li, Dailin (Fri Dec 07 2018 - 12:09:15 PST)
How to get the jac.restrt？
- Elvis Martis (Tue Dec 11 2018 - 00:53:45 PST)
- Elvis Martis (Mon Dec 10 2018 - 20:48:15 PST)

Amber Archive Dec 2018 by subject