[AMBER] MCPB.py problems For atom (.R<AL1 380>.A<CL2 1>) could not find vdW (or other) parameters for type (Y1)

From: Jinfeng Chen <201612095.mail.sdu.edu.cn>
Date: Mon, 3 Dec 2018 19:42:29 +0800

   Hello AMBER users,
   I need to construct a metal contain system, thus I used the MCPB.py bu
   Pengfei Li, but after following the tutorial, I get an error in tleap like
   this :
   ----------------------------------------------------------------------------
   ----------------------------------------------
   /home/hj/program/amber18/bin/teLeap: Error!
   For atom (.R<AL1 380>.A<CL2 1>) could not find vdW (or other) parameters for
   type (Y1)
   /home/hj/program/amber18/bin/teLeap: Error!
   For atom (.R<AL1 380>.A<CL3 2>) could not find vdW (or other) parameters for
   type (Y2)
   /home/hj/program/amber18/bin/teLeap: Error!
   For atom (.R<AL1 380>.A<O4 3>) could not find vdW (or other) parameters for
   type (Y3)
   /home/hj/program/amber18/bin/teLeap: Error!
   For atom (.R<AL1 380>.A<O6 5>) could not find vdW (or other) parameters for
   type (Y4)
   /home/hj/program/amber18/bin/teLeap: Error!
   For atom (.R<AU1 381>.A<AU 1>) could not find vdW (or other) parameters for
   type (M1)
   ----------------------------------------------------------------------------
   ----------------------------------------------
   So whats the problem? And how to solve the problem?
   Any suggestion will be apprecialted.
   Thank you !
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Received on Mon Dec 03 2018 - 04:00:02 PST
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