Amber Archive Dec 2018: by date

Sunday, 2 December 2018
- [AMBER] Extracting PDBs every 'N" ns Jag Silwal
- [AMBER] Ris: Extracting PDBs every 'N" ns Casalini Tommaso
- Re: [AMBER] Ris: Extracting PDBs every 'N" ns Jag Silwal
- [AMBER] Ris: Ris: Extracting PDBs every 'N" ns Casalini Tommaso
- Re: [AMBER] Extracting PDBs every 'N" ns David Case
- [AMBER] RMSD vs RMSF Xiaoyu Wang
- Re: [AMBER] RMSD vs RMSF Elvis Martis
- Re: [AMBER] cpptraj error Rajbinder Kaur Virk
Monday, 3 December 2018
- [AMBER] TUTORIAL Charu Sharma (JRF)
- Re: [AMBER] TUTORIAL Bill Ross
- Re: [AMBER] Extracting PDBs every 'N" ns Jag Silwal
- Re: [AMBER] TUTORIAL Charu Sharma (JRF)
- Re: [AMBER] TUTORIAL Bill Ross
- [AMBER] minimization difficulties Kimia Sh
- Re: [AMBER] TUTORIAL Charu Sharma (JRF)
- Re: [AMBER] TUTORIAL Bill Ross
- Re: [AMBER] minimization difficulties Bill Ross
- [AMBER] MCPB.py problems For atom (.R<AL1 380>.A<CL2 1>) could not find vdW (or other) parameters for type (Y1) Jinfeng Chen
- Re: [AMBER] minimization difficulties David A Case
- [AMBER] Delta G pb and Delta G Sa Keiran Corbett
- [AMBER] stapled peptide- PDB bond atom problem Angew Chemie
- Re: [AMBER] stapled peptide- PDB bond atom problem David A Case
- Re: [AMBER] Delta G pb and Delta G Sa Wesley Michael Botello-Smith
- Re: [AMBER] Extracting PDBs every 'N" ns Daniel Roe
- Re: [AMBER] cpptraj error Daniel Roe
- Re: [AMBER] Obtaining contact maps with cpptraj Daniel Roe
- Re: [AMBER] Minimisation and periodic boundaries. Daniel Roe
- Re: [AMBER] Linear Interaction Energy Daniel Roe
Tuesday, 4 December 2018
- Re: [AMBER] cpptraj error Rajbinder Kaur Virk
- [AMBER] QM/MM using Amber and Gaussian: Discrepancies between the QM energy from the gaussian output file and the energy reported in the mdout file as EXTERNESCF Eric Lang
- Re: [AMBER] QM/MM using Amber and Gaussian: Discrepancies between the QM energy from the gaussian output file and the energy reported in the mdout file as EXTERNESCF Antoine MARION
- Re: [AMBER] QM/MM using Amber and Gaussian: Discrepancies between the QM energy from the gaussian output file and the energy reported in the mdout file as EXTERNESCF Eric Lang
- [AMBER] Antechamber give a different total charge from net charge that I specified by -nc Jinfeng Huang
- Re: [AMBER] QM/MM using Amber and Gaussian: Discrepancies between the QM energy from the gaussian output file and the energy reported in the mdout file as EXTERNESCF Goetz, Andreas
- Re: [AMBER] Obtaining contact maps with cpptraj Alex Spasic
- [AMBER] Cpptraj usage Chhaya Singh
Wednesday, 5 December 2018
- [AMBER] Backbone position restraints as a group lorenaz
- Re: [AMBER] QM/MM using Amber and Gaussian: Discrepancies between the QM energy from the gaussian output file and the energy reported in the mdout file as EXTERNESCF Eric Lang
- Re: [AMBER] QM/MM using Amber and Gaussian: Discrepancies between the QM energy from the gaussian output file and the energy reported in the mdout file as EXTERNESCF Antoine MARION
- [AMBER] regarding graph saving in JPEG Charu Sharma (JRF)
- [AMBER] water-induced force on substrate along time Meng Wu
- Re: [AMBER] regarding graph saving in JPEG David A Case
- Re: [AMBER] Minimisation and periodic boundaries Stejskal, Lenka
- Re: [AMBER] QM/MM using Amber and Gaussian: Discrepancies between the QM energy from the gaussian output file and the energy reported in the mdout file as EXTERNESCF Goetz, Andreas
- [AMBER] Include bound ions as part of the receptor molecule in MMPBSA.py Nanjie Deng
- [AMBER] Ambiguous interfaces in generic interface Pedro H. Oliveira
- [AMBER] tleap does not add OXT when I load a crystal structure Thomas Evangelidis
- Re: [AMBER] tleap does not add OXT when I load a crystal structure David Cerutti
- Re: [AMBER] water-induced force on substrate along time Meng Wu
- Re: [AMBER] Ambiguous interfaces in generic interface David Case
- Re: [AMBER] tleap does not add OXT when I load a crystal structure David Case
- [AMBER] numpy related problem in amber Seketoulie Keretsu
- Re: [AMBER] numpy related problem in amber Elvis Martis
Thursday, 6 December 2018
- Re: [AMBER] Include bound ions as part of the receptor molecule in MMPBSA.py Keiran Corbett
- Re: [AMBER] tleap does not add OXT when I load a crystal structure Thomas Evangelidis
- Re: [AMBER] Include bound ions as part of the receptor molecule in MMPBSA.py Christina Bergonzo
- Re: [AMBER] tleap does not add OXT when I load a crystal structure David A Case
- Re: [AMBER] numpy related problem in amber David A Case
- Re: [AMBER] Backbone position restraints as a group David A Case
- Re: [AMBER] Backbone position restraints as a group lorenaz
- [AMBER] Strange TIP3P solvent box distortions in Amber 18 with Mg2+ Kasprzak, Wojciech (NIH/NCI) [C]
- Re: [AMBER] Strange TIP3P solvent box distortions in Amber 18 with Mg2+ David Cerutti
- Re: [AMBER] Strange TIP3P solvent box distortions in Amber 18 with Mg2+, but no MG Kasprzak, Wojciech (NIH/NCI) [C]
- [AMBER] Calculate the conduct rate from PMF Meng Wu
- Re: [AMBER] Strange TIP3P solvent box distortions in Amber 18 with Mg2+, but no MG David Case
- Re: [AMBER] thermostat on solvent David Case
- Re: [AMBER] Include bound ions as part of the receptor molecule in MMPBSA.py Nanjie Deng
- Re: [AMBER] numpy related problem in amber Seketoulie Keretsu
- Re: [AMBER] numpy related problem in amber Hai Nguyen
Friday, 7 December 2018
- [AMBER] AMBER18 Update Fail (AmberTools Update.10) Rui Sun
- Re: [AMBER] AMBER18 Update Fail (AmberTools Update.10) Seketoulie Keretsu
- Re: [AMBER] numpy related problem in amber Seketoulie Keretsu
- Re: [AMBER] AMBER18 Update Fail (AmberTools Update.10) Daniel Roe
- Re: [AMBER] Strange TIP3P solvent box - reference to the tutorial Kasprzak, Wojciech (NIH/NCI) [C]
- [AMBER] vdwmeth Hosein Geraili Daronkola
- Re: [AMBER] vdwmeth Hosein Geraili Daronkola
- Re: [AMBER] vdwmeth Hosein Geraili Daronkola
- [AMBER] Can a Nudged elastic band (NEB) job run on a single GPU? Li, Dailin
- Re: [AMBER] AMBER18 Update Fail (AmberTools Update.10) Rui Sun
- Re: [AMBER] vdwmeth Brian Radak
- Re: [AMBER] Can a Nudged elastic band (NEB) job run on a single GPU? Ghoreishi, Delaram
- [AMBER] 答复: Can a Nudged elastic band (NEB) job run on a single GPU? Li, Dailin
- Re: [AMBER] Can a Nudged elastic band (NEB) job run on a single GPU? Ghoreishi, Delaram
- [AMBER] 答复: Can a Nudged elastic band (NEB) job run on a single GPU? Li, Dailin
- Re: [AMBER] vdwmeth Hosein Geraili Daronkola
Saturday, 8 December 2018
- Re: [AMBER] vdwmeth Brian Radak
- [AMBER] Dear AMBER members, 대학원/일반대학원 생명과학부
- Re: [AMBER] AMBER18 Update Fail (AmberTools Update.10) David Case
- Re: [AMBER] vdwmeth David Case
- Re: [AMBER] RESP charge calculation Pengfei Li
- Re: [AMBER] MCPB.py problems For atom (.R<AL1 380>.A<CL2 1>) could not find vdW (or other) parameters for type (Y1) Pengfei Li
Sunday, 9 December 2018
- Re: [AMBER] Dear AMBER members, David Case
- [AMBER] ligand charges for md Fabian Glaser
- Re: [AMBER] ligand charges for md David Case
- [AMBER] Ptraj Command not found. Pavithra Support
- Re: [AMBER] Ptraj Command not found. Pratul Agarwal
Monday, 10 December 2018
- Re: [AMBER] RESP charge calculation Aashish Bhatt
- [AMBER] Problems with installation on Mac with Mojave. (cpptraj??) Margarita I. Bernal-Uruchurtu
- Re: [AMBER] Problems with installation on Mac with Mojave. (cpptraj??) Bill Ross
- Re: [AMBER] Problems with installation on Mac with Mojave. (cpptraj??) Gustaf Olsson
- Re: [AMBER] Ptraj Command not found. Daniel Roe
- Re: [AMBER] Cpptraj usage Daniel Roe
- Re: [AMBER] Minimisation and periodic boundaries Daniel Roe
- [AMBER] Size limit for amber Ibrahim M. Moustafa
- Re: [AMBER] Size limit for amber David A Case
- Re: [AMBER] Calculate the conduct rate from PMF David A Case
- Re: [AMBER] Size limit for amber Ibrahim M. Moustafa
- [AMBER] amber12 install problem Qasim Pars
- [AMBER] Fatty acid ester parameter file andreas.tosstorff.cup.uni-muenchen.de
- [AMBER] How to get the jac.restrt？ 王茜茜
- [AMBER] Re: How to get the jac.restrt？ Elvis Martis
- Re: [AMBER] How to get the jac.restrt？ 王茜茜
- [AMBER] Reading Amber-generated NetCDF files using python Debostuti Ghoshdastidar
Tuesday, 11 December 2018
- [AMBER] GBSA error jacob wick
- [AMBER] Re: How to get the jac.restrt？ Elvis Martis
- Re: [AMBER] How to get the jac.restrt？ 王茜茜
- Re: [AMBER] Reading Amber-generated NetCDF files using python Pratul Agarwal
- Re: [AMBER] Reading Amber-generated NetCDF files using python Debostuti Ghoshdastidar
- Re: [AMBER] Reading Amber-generated NetCDF files using python Pratul Agarwal
- Re: [AMBER] amber12 install problem David A Case
- Re: [AMBER] How to get the jac.restrt？ David A Case
- Re: [AMBER] Reading Amber-generated NetCDF files using python David A Case
- Re: [AMBER] Problems with installation on Mac with Mojave. (cpptraj??) Margarita I. Bernal-Uruchurtu
- Re: [AMBER] Problems with installation on Mac with Mojave. (cpptraj??) Margarita I. Bernal-Uruchurtu
- Re: [AMBER] Problems with installation on Mac with Mojave. (cpptraj??) Gustaf Olsson
- Re: [AMBER] How to get the jac.restrt？ 王茜茜
- Re: [AMBER] ligand charges for md Fabian Glaser
- Re: [AMBER] Problems with installation on Mac with Mojave. (cpptraj??) David A Case
- [AMBER] GIST calculation on NAMD-generated trajectory Bin Sun
- [AMBER] GBSA error jacob wick
- Re: [AMBER] Reading Amber-generated NetCDF files using python Debostuti Ghoshdastidar
- Re: [AMBER] Reading Amber-generated NetCDF files using python Debostuti Ghoshdastidar
Wednesday, 12 December 2018
- Re: [AMBER] GIST calculation on NAMD-generated trajectory Daniel Roe
- Re: [AMBER] Size limit for amber Daniel Roe
- Re: [AMBER] GBSA error Daniel Roe
- Re: [AMBER] Size limit for amber Ibrahim M. Moustafa
- Re: [AMBER] GIST calculation on NAMD-generated trajectory anthonycruzpr
- Re: [AMBER] GIST calculation on NAMD-generated trajectory Daniel Roe
- [AMBER] PSF file generation for heme and hydrogen peroxide 대학원/일반대학원 생명과학부
Thursday, 13 December 2018
- Re: [AMBER] PSF file generation for heme and hydrogen peroxide David A Case
- [AMBER] strange line between protein chains Núbia Prates
- [AMBER] mmpbsa Farial Tavakoli
Wednesday, 12 December 2018
- [AMBER] using sander in Xeon Phi Alfredo Quevedo
Thursday, 13 December 2018
- Re: [AMBER] strange line between protein chains Pratul Agarwal
- Re: [AMBER] using sander in Xeon Phi David A Case
- Re: [AMBER] strange line between protein chains David A Case
Wednesday, 12 December 2018
- Re: [AMBER] using sander in Xeon Phi Alfredo Quevedo
Thursday, 13 December 2018
- [AMBER] Error when installing AMBER16 Bellesis, Andrew G
- Re: [AMBER] strange line between protein chains Bill Ross
- Re: [AMBER] GIST calculation on NAMD-generated trajectory Bin Sun
- Re: [AMBER] GIST calculation on NAMD-generated trajectory Bin Sun
- Re: [AMBER] GIST calculation on NAMD-generated trajectory Daniel Roe
Friday, 14 December 2018
- Re: [AMBER] strange line between protein chains Núbia Prates
- [AMBER] sander: command not found maya nair
- Re: [AMBER] sander: command not found Gustaf Olsson
- [AMBER] MMPBSA Farial Tavakoli
- [AMBER] resp charge fitting Thomas Fox
- Re: [AMBER] strange line between protein chains Pratul Agarwal
- [AMBER] AMBER18 on RTX 2080Ti Rui Sun
- Re: [AMBER] AMBER18 on RTX 2080Ti David Cerutti
- Re: [AMBER] AMBER18 on RTX 2080Ti Pratul Agarwal
- Re: [AMBER] AMBER18 on RTX 2080Ti David Cerutti
Saturday, 15 December 2018
- [AMBER] Query regarding force field Rakesh Srivastava
- Re: [AMBER] Query regarding force field David Case
- Re: [AMBER] Query regarding force field Rakesh Srivastava
Sunday, 16 December 2018
- [AMBER] Acpype related problem : topology for GROMACS Seketoulie Keretsu
- Re: [AMBER] Acpype related problem : topology for GROMACS Bill Ross
- [AMBER] DOi for Amber 2017 David Sáez
- [AMBER] MCPB.py Modelling Question Hunter Wilson
- Re: [AMBER] Acpype related problem : topology for GROMACS Seketoulie Keretsu
- Re: [AMBER] Lipid NMR order parameters Baker, Joseph
- Re: [AMBER] Acpype related problem : topology for GROMACS Bill Ross
- [AMBER] is acpype compatible with amber 2018?? parmchk2 and not parmchk available Seketoulie Keretsu
- Re: [AMBER] Acpype related problem : topology for GROMACS Seketoulie Keretsu
- [AMBER] CUDA test failure Asma Abro
- Re: [AMBER] CUDA test failure Bill Ross
Monday, 17 December 2018
- [AMBER] AMBER16 re-installation problem ilhan.yavuz
- Re: [AMBER] Acpype related problem : topology for GROMACS Alan
- [AMBER] Query regarding the internal energy of protein. Leena Aggarwal
- Re: [AMBER] Acpype related problem : topology for GROMACS David A Case
- Re: [AMBER] DOi for Amber 2017 David A Case
- [AMBER] lambda option in SEBOMD Margarita I. Bernal-Uruchurtu
- Re: [AMBER] Acpype related problem : topology for GROMACS Seketoulie Keretsu
- Re: [AMBER] CUDA test failure David A Case
- Re: [AMBER] AMBER16 re-installation problem David A Case
- Re: [AMBER] Query regarding the internal energy of protein. David A Case
- Re: [AMBER] CUDA test failure Pratul Agarwal
- Re: [AMBER] Problems with installation on Mac with Mojave. (cpptraj??) Gustaf Olsson
- Re: [AMBER] CUDA test failure Asma Abro
- Re: [AMBER] Acpype related problem : topology for GROMACS Alan
- Re: [AMBER] Query regarding the internal energy of protein. Pratul Agarwal
- Re: [AMBER] Acpype related problem : topology for GROMACS Seketoulie Keretsu
- [AMBER] Problems modifing box lengths in a .rst file. Lucas Bandeira
- Re: [AMBER] Problems modifing box lengths in a .rst file. Lucas Bandeira
- Re: [AMBER] Problems modifing box lengths in a .rst file. Daniel Roe
- Re: [AMBER] Problems modifing box lengths in a .rst file. Lucas Bandeira
- Re: [AMBER] Problems modifing box lengths in a .rst file. Daniel Roe
- [AMBER] Missing gaff parameters for epoxy ring Chang Woon Jang
- Re: [AMBER] AMBER18 on RTX 2080Ti Rui Sun
- Re: [AMBER] AMBER18 on RTX 2080Ti Pratul Agarwal
- Re: [AMBER] AMBER18 on RTX 2080Ti Ross Walker
- Re: [AMBER] AMBER18 on RTX 2080Ti David Cerutti
- [AMBER] amd running error Nisha Amarnath Jonniya
- Re: [AMBER] Query regarding the internal energy of protein. Leena Aggarwal
- Re: [AMBER] amd running error Gustaf Olsson
- Re: [AMBER] amd running error Bill Ross
Tuesday, 18 December 2018
- Re: [AMBER] AMBER18 on RTX 2080Ti Rui Sun
- [AMBER] Too much comparisons failed for test_at_parallel changseo park
- Re: [AMBER] Problems modifing box lengths in a .rst file. David A Case
- Re: [AMBER] Missing gaff parameters for epoxy ring David A Case
- Re: [AMBER] Problems modifing box lengths in a .rst file. Lucas Bandeira
- [AMBER] error on equilibriation Akshay Prabhakant
- Re: [AMBER] error on equilibriation Pratul Agarwal
- [AMBER] Simulating a DNA Double helix with a mutated base pair Anthony Bogetti
- Re: [AMBER] Simulating a DNA Double helix with a mutated base pair Pratul Agarwal
- Re: [AMBER] Simulating a DNA Double helix with a mutated base pair David A Case
- Re: [AMBER] Too much comparisons failed for test_at_parallel David A Case
- Re: [AMBER] Problems modifing box lengths in a .rst file. Daniel Roe
- Re: [AMBER] Missing gaff parameters for epoxy ring Chang Woon Jang
- Re: [AMBER] AMBER18 on RTX 2080Ti Pratul Agarwal
- Re: [AMBER] Problems modifing box lengths in a .rst file. David Cerutti
- Re: [AMBER] GIST calculation on NAMD-generated trajectory Tom Kurtzman
Wednesday, 19 December 2018
- [AMBER] info on trajectory files Akshay Prabhakant
- Re: [AMBER] info on trajectory files Dr. Anselm Horn
- Re: [AMBER] Problems modifing box lengths in a .rst file. Lucas Bandeira
- [AMBER] Problems calculating self diffusion coefficient of water Lucas Bandeira
- Re: [AMBER] Problems calculating self diffusion coefficient of water Saeed Izadi
- [AMBER] CUDA bootstrap site Bill Ross
- [AMBER] cation-pi and amber FF Sundar
- [AMBER] Amber18 compilation error on a Linux CPU cluster Sundar
Thursday, 20 December 2018
- [AMBER] ACE Keiran Corbett
- Re: [AMBER] Problems calculating self diffusion coefficient of water Lucas Bandeira
- Re: [AMBER] ACE Bill Ross
- Re: [AMBER] ACE David Cerutti
- Re: [AMBER] ACE Bill Ross
- Re: [AMBER] Amber18 compilation error on a Linux CPU cluster David A Case
- Re: [AMBER] Problems calculating self diffusion coefficient of water Tom Kurtzman
- [AMBER] Axis of a helix as a collective variable Akshay Prabhakant
- Re: [AMBER] Axis of a helix as a collective variable Akshay Prabhakant
- Re: [AMBER] Axis of a helix as a collective variable Wesley Michael Botello-Smith
- Re: [AMBER] Axis of a helix as a collective variable Osman, Roman
- Re: [AMBER] Axis of a helix as a collective variable Pratul Agarwal
- [AMBER] ff12pol in Amber 18 Han, Jaebeom
- Re: [AMBER] ff12pol in Amber 18 Ray Luo
- Re: [AMBER] Axis of a helix as a collective variable Wesley Michael Botello-Smith
- Re: [AMBER] Axis of a helix as a collective variable Pratul Agarwal
- Re: [AMBER] Axis of a helix as a collective variable Akshay Prabhakant
- Re: [AMBER] Axis of a helix as a collective variable Pratul Agarwal
- [AMBER] mpi Charu Sharma (JRF)
- Re: [AMBER] mpi Elvis Martis
Friday, 21 December 2018
- [AMBER] Total energy of glycan simulation is postive Rajarshi Roy
- [AMBER] cpin file format issue in production run Manju Sah
- Re: [AMBER] Total energy of glycan simulation is postive Daniel Roe
- Re: [AMBER] mpi David A Case
- Re: [AMBER] Total energy of glycan simulation is postive David A Case
- Re: [AMBER] cpin file format issue in production run Cruzeiro,Vinicius Wilian D
- [AMBER] How to add ff99sb*ildn? Midhun K Madhu
- Re: [AMBER] AMBER18 on RTX 2080Ti Mlynsky Vojtech
- Re: [AMBER] How to add ff99sb*ildn? Vlad Cojocaru
- [AMBER] Problem running tiMerge (parmed) Wesley Michael Botello-Smith
- Re: [AMBER] Lipid NMR order parameters Daniel Roe
- Re: [AMBER] Problems calculating self diffusion coefficient of water Daniel Roe
- [AMBER] Testing AMBER16 installation in parallel; possible bug in testing scripts Bellesis, Andrew G
- Re: [AMBER] MCPB.py Modelling Question Pengfei Li
- Re: [AMBER] Testing AMBER16 installation in parallel; possible bug in testing scripts Pratul Agarwal
- Re: [AMBER] How to add ff99sb*ildn? Leena Aggarwal
- Re: [AMBER] ligand charges for md dhaval patel
Saturday, 22 December 2018
- Re: [AMBER] Total energy of glycan simulation is postive Rajarshi Roy
- Re: [AMBER] Problems calculating self diffusion coefficient of water Lucas Bandeira
- Re: [AMBER] Testing AMBER16 installation in parallel; possible bug in testing scripts David Case
- [AMBER] multiconformational respgen with fixed charges and gcc 4.8 Stephan Schott
- Re: [AMBER] Amber18 compilation error on a Linux CPU cluster Sundar
- [AMBER] MD Analysis - Consistency senal dinuka
Sunday, 23 December 2018
- Re: [AMBER] Amber18 compilation error on a Linux CPU cluster Sundar
- Re: [AMBER] Amber18 compilation error on a Linux CPU cluster Bill Ross
Monday, 24 December 2018
- [AMBER] regarding G-quadraplex Charu Sharma (JRF)
- Re: [AMBER] regarding G-quadraplex Bill Ross
- Re: [AMBER] Amber18 compilation error on a Linux CPU cluster Sundar
Tuesday, 25 December 2018
- [AMBER] constant dieletcric Farial Tavakoli
- [AMBER] All Energy Calculations in AMBER18. DHEERAJ CHITARA
- [AMBER] Calculation of Hbond energy MOHD HOMAIDUR RAHMAN
- Re: [AMBER] Calculation of Hbond energy David Case
- [AMBER] FATAL Error: Atom does not have a type Mac Kevin Braza
- [AMBER] Fwd: FATAL Error: Atom does not have a type Mac Kevin Braza
- Re: [AMBER] FATAL Error: Atom does not have a type Elvis Martis
Wednesday, 26 December 2018
- [AMBER] GPU download(upload) only a small subset of coordinates 张浩淼
- [AMBER] TI method with combination of restrained MD in pmemd.cuda of AMBER18 kegohda2kegohda.mx5.canvas.ne.jp
- Re: [AMBER] GPU download(upload) only a small subset of coordinates Ghoreishi, Delaram
- Re: [AMBER] FATAL Error: Atom does not have a type David Case
Thursday, 27 December 2018
- Re: [AMBER] FATAL Error: Atom does not have a type Mac Kevin Braza
- Re: [AMBER] FATAL Error: Atom does not have a type Bill Ross
- Re: [AMBER] TI method with combination of restrained MD in pmemd.cuda of AMBER18 David Case
- [AMBER] compilation error AMBER16 Seibold, Steve Allan
- Re: [AMBER] compilation error AMBER16 David Case
- [AMBER] Fwd: constant dieletcric Farial Tavakoli
Friday, 28 December 2018
- Re: [AMBER] TI method with combination of restrained MD in pmemd.cuda of AMBER18 kegohda2kegohda.mx5.canvas.ne.jp
- Re: [AMBER] constant dieletcric Daniel Roe
- Re: [AMBER] All Energy Calculations in AMBER18. Daniel Roe
- Re: [AMBER] Amber18 compilation error on a Linux CPU cluster Daniel Roe
- Re: [AMBER] MD Analysis - Consistency Daniel Roe
- Re: [AMBER] compilation error AMBER16 Seibold, Steve Allan
Saturday, 29 December 2018
- [AMBER] q wangjianing_mail
- Re: [AMBER] MCPB.py Modelling Question Hunter Wilson
Sunday, 30 December 2018
- Re: [AMBER] multiconformational respgen with fixed charges and gcc 4.8 David Case
- Re: [AMBER] multiconformational respgen with fixed charges and gcc 4.8 Stephan Schott
Monday, 31 December 2018
- [AMBER] HMR 4fs error. M RCC
- Re: [AMBER] HMR 4fs error. David A Case
- [AMBER] Obtaining necessary *.top for MMPBSA.py Sundar
- Re: [AMBER] Obtaining necessary *.top for MMPBSA.py Qinghua Liao

Last message date: Mon Dec 31 2018 - 07:30:02 PST
Archived on: Fri Apr 26 2024 - 05:55:50 PDT

Amber Archive Dec 2018 by date