Hi,
I've been following suggestions exchanged by Andrew Schaub and Gustav
Olsson for installing Ambertools18 on Mac with Mojave.
After commenting some lines and modifying the libstdc++ for libc++ in the
suggested places, I got the next error message:
Testing C++11 support: OK
Testing clang C++/Fortran linking: ./configure: line 321: 68585
Segmentation fault: 11 ./testp > /dev/null
Program failed, compiled with: clang++ -o testp testc.o testf.o
-lgfortran -stdlib=libc++ -L/usr/lib/
The ccptraj_config.log doesn't help:
amber18 mabel$ more AmberTools/src/cpptraj_config.log
fftw3 enabled.
fftw3 specified: /Users/mabel/WORK/amber18/
sanderlib specified: /Users/mabel/WORK/amber18/
netcdf specified: /Users/mabel/WORK/amber18/
arpack specified: /Users/mabel/WORK/amber18/
Testing C++11 support: OK
Testing clang C++/Fortran linking: ./configure: line 321: 41308
Segmentation fault: 11 ./testp > /dev/null
Program failed, compiled with: clang++ -o testp testc.o testf.o
-lgfortran -stdlib=libc++ -L/usr/lib/
The problem seems to be with cpptraj and I previously read a comment in
the forum about some warnings. Indeed, there're a couple of them related
with libraries:
warning: URGENT: building for OSX, but linking against dylib
(/usr/lib/libSystem.dylib) built for (unknown). Note: This will be an error
in the future.
Detected 64 bit operating system.
ld: warning: URGENT: building for OSX, but linking against dylib
(/usr/lib/libSystem.dylib) built for (unknown). Note: This will be an error
in the future.
I guess they might be related with the failure in compiling.
I'd very much appreciate your help.
Best,
MBernal
Science is built with facts as a house is with stones, but a collection of
facts is no more a science than a heap of stones is a house. - Henri
Poincaré
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Received on Mon Dec 10 2018 - 03:30:02 PST
