Dear users,
I am trying to install Amber12 on Ubuntu 18.1 but I couldn't. Whereas I had
used/installed Amber on ubuntu 16.04 before.
Install commands I used are here:
sudo apt-get install csh flex patch gfortran g++ make xorg-dev libbz2-dev
sudo apt-get install python-tk python-dev python-matplotlib python-numpy
python-scipy
sudo apt-get install libboost-python-dev
tar jxvf AmberTools13.tar.bz2
tar jxvf Amber12.tar.bz2
#put the following two lines in ~/.bashrc file:
#export AMBERHOME=/home/qasim/software/amber12
#export PATH=${AMBERHOME}/bin\:${PATH}
cd amber12
export AMBERHOME=`pwd`
./configure gnu
...
gcc -v
The version is 8.2.0
ERROR: RISM and PBSA FFT solver require version 4.3 or higher of the GNU
compiler.
Please re-run configure with the '-nofftw3' flag to use this
compiler:
./configure -nofftw3 gnu
Configure failed due to the errors above!
Then I tried the following command and it works:
./configure -nofftw3 gnu
..
The configuration file, config.h, was successfully created.
The next step is to type 'make install'
Cleaning the src directories. This may take a few moments.
Configure complete.
Lastly I used the following command and got the error below. Do you know
how I can fix these errors?
make install
...
make[5]: *** [Makefile:339: MTKException.lo] Error 1
make[5]: Leaving directory
'/home/qasim/software/amber12/AmberTools/src/mtkpp/src/Diagnostics'
make[4]: *** [Makefile:282: all-recursive] Error 1
make[4]: Leaving directory
'/home/qasim/software/amber12/AmberTools/src/mtkpp/src'
make[3]: *** [Makefile:389: all-recursive] Error 1
make[3]: Leaving directory
'/home/qasim/software/amber12/AmberTools/src/mtkpp'
make[2]: *** [Makefile:298: all] Error 2
make[2]: Leaving directory
'/home/qasim/software/amber12/AmberTools/src/mtkpp'
make[1]: *** [Makefile:107: install_mtkpp] Error 2
make[1]: Leaving directory '/home/qasim/software/amber12/AmberTools/src'
make: *** [Makefile:7: install] Error 2
Any help will be appreciated.
Thanks.
--
Qasim Pars
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Received on Mon Dec 10 2018 - 12:00:01 PST
