Amber Archive Apr 2009: by thread

Re: [AMBER] ambmol2? Junmei Wang (Tue Mar 31 2009 - 16:08:25 PDT)
- Re: [AMBER] ambmol2? Taufik Al-Sarraj (Tue Mar 31 2009 - 19:15:00 PDT)
  - Re: [AMBER] ambmol2? Junmei Wang (Tue Mar 31 2009 - 19:41:35 PDT)
    - Re: [AMBER] ambmol2? David A. Case (Wed Apr 01 2009 - 06:19:00 PDT)
[AMBER] Maxwell-Boltzmann distribution and ig=-1 Naser Alijabbari (Tue Mar 31 2009 - 18:35:43 PDT)
- Re: [AMBER] Maxwell-Boltzmann distribution and ig=-1 Carlos Simmerling (Tue Mar 31 2009 - 18:41:49 PDT)
  - Re: [AMBER] Maxwell-Boltzmann distribution and ig=-1 Naser Alijabbari (Tue Mar 31 2009 - 19:15:13 PDT)
    - Re: [AMBER] Maxwell-Boltzmann distribution and ig=-1 Carlos Simmerling (Tue Mar 31 2009 - 19:24:34 PDT)
    - Re: [AMBER] Maxwell-Boltzmann distribution and ig=-1 Naser Alijabbari (Tue Mar 31 2009 - 19:43:28 PDT)
    - RE: [AMBER] Maxwell-Boltzmann distribution and ig=-1 Ross Walker (Tue Mar 31 2009 - 20:52:42 PDT)
    - Re: [AMBER] Maxwell-Boltzmann distribution and ig=-1 Carlos Simmerling (Wed Apr 01 2009 - 04:01:51 PDT)
[AMBER] a layer of water Nancy (Tue Mar 31 2009 - 18:37:51 PDT)
- Re: [AMBER] a layer of water oguz gurbulak (Wed Apr 01 2009 - 00:26:46 PDT)
Re: [AMBER] mm_pbsa problem Giorgos Lamprinidis (Wed Apr 01 2009 - 00:36:53 PDT)
[AMBER] constant-pH: appearance of not titrated residues during the Monte Carlo simulation Therese Malliavin (Wed Apr 01 2009 - 02:06:19 PDT)
- Re: [AMBER] constant-pH: appearance of not titrated residues during the Monte Carlo simulation David A. Case (Sat Apr 04 2009 - 06:20:28 PDT)
[AMBER] run protein with structural Ca+ sarah genare (Wed Apr 01 2009 - 04:01:24 PDT)
[AMBER] Failure to compile amber9 serial ifort gcc Francesco Pietra (Wed Apr 01 2009 - 04:04:18 PDT)
- Re: [AMBER] Failure to compile amber9 serial ifort gcc Alessandro Nascimento (Wed Apr 01 2009 - 04:09:42 PDT)
- Re: [AMBER] Failure to compile amber9 serial ifort gcc Francesco Pietra (Thu Apr 02 2009 - 04:16:36 PDT)
  - RE: [AMBER] Failure to compile amber9 serial ifort gcc Ross Walker (Thu Apr 02 2009 - 08:45:19 PDT)
    - Re: [AMBER] Failure to compile amber9 serial ifort gcc Francesco Pietra (Thu Apr 02 2009 - 09:00:46 PDT)
[AMBER] fillratio error in mmpbsa m m (Wed Apr 01 2009 - 04:42:45 PDT)
- Re: [AMBER] fillratio error in mmpbsa Han Ming (Wed Apr 01 2009 - 08:06:08 PDT)
- RE: [AMBER] fillratio error in mmpbsa Ray Luo (Wed Apr 01 2009 - 12:24:20 PDT)
[AMBER] calculation of Pi-Pi interaction energy aneesh cna (Wed Apr 01 2009 - 05:01:51 PDT)
[AMBER] calculation of Pi-Pi interaction energy Jacopo Sgrignani (Wed Apr 01 2009 - 05:24:28 PDT)
- Re: [AMBER] calculation of Pi-Pi interaction energy Jiri Sponer (Wed Apr 01 2009 - 05:38:49 PDT)
[AMBER] yacc parser Francesco Pietra (Wed Apr 01 2009 - 07:58:01 PDT)
- Re: [AMBER] yacc parser Mark Williamson (Wed Apr 01 2009 - 10:15:56 PDT)
- [AMBER] Fwd: yacc parser Francesco Pietra (Wed Apr 01 2009 - 13:53:01 PDT)
- Re: [AMBER] yacc parser David A. Case (Thu Apr 02 2009 - 05:03:06 PDT)
  - Re: [AMBER] yacc parser Francesco Pietra (Thu Apr 02 2009 - 08:37:53 PDT)
[AMBER] make test.serial.QMMM michael bane (Wed Apr 01 2009 - 08:44:51 PDT)
- Re: [AMBER] make test.serial.QMMM Seth Hayik (Wed Apr 01 2009 - 10:26:21 PDT)
[AMBER] ptraj and namd charmm dcd Sandro L. Fornili (Wed Apr 01 2009 - 08:59:37 PDT)
- Re: [AMBER] ptraj and namd charmm dcd Thomas Cheatham III (Wed Apr 01 2009 - 09:08:51 PDT)
[AMBER] FF Parameters Transformations ...? Marek Malý (Wed Apr 01 2009 - 10:29:26 PDT)
- Re: [AMBER] FF Parameters Transformations ...? Karl Kirschner (Mon Apr 06 2009 - 00:39:31 PDT)
  - Re: [AMBER] FF Parameters Transformations ...? Marek Malý (Mon Apr 06 2009 - 13:03:58 PDT)
Re: [AMBER] AmberTools compilation error Marius Retegan (Wed Apr 01 2009 - 13:03:59 PDT)
RE: [AMBER] Problem reading PDB file into XLEAP - SLEAP Hopkins, Robert (Wed Apr 01 2009 - 16:10:44 PDT)
Re: [AMBER] problem with the results in the .out file! Aravind S (Wed Apr 01 2009 - 22:49:19 PDT)
[AMBER] Help: An error happened when I calculate mm/pbsa thirsty (Thu Apr 02 2009 - 01:12:25 PDT)
- Re: [AMBER] Help: An error happened when I calculate mm/pbsa Carlos Simmerling (Thu Apr 02 2009 - 04:19:04 PDT)
  - Re: [AMBER] Help: An error happened when I calculate mm/pbsa thirsty (Fri Apr 03 2009 - 00:11:19 PDT)
[AMBER] please help me out bharat lakhani (Thu Apr 02 2009 - 03:13:48 PDT)
- Re: [AMBER] please help me out David A. Case (Thu Apr 02 2009 - 10:48:10 PDT)
[AMBER] Counter-ions waleed zalloum (Thu Apr 02 2009 - 03:15:12 PDT)
RE: [AMBER] problem in input Rausch, Felix (Thu Apr 02 2009 - 04:08:27 PDT)
- RE: [AMBER] problem in input balaji nagarajan (Thu Apr 02 2009 - 13:23:18 PDT)
- RE: [AMBER] problem in input Rausch, Felix (Fri Apr 03 2009 - 01:04:36 PDT)
[AMBER] number of waters in first and second solvation shell Siddharth Rastogi (Thu Apr 02 2009 - 04:40:21 PDT)
[AMBER] explicit ion with igb=1 Bala subramanian (Thu Apr 02 2009 - 06:39:10 PDT)
- Re: [AMBER] explicit ion with igb=1 Carlos Simmerling (Thu Apr 02 2009 - 06:53:54 PDT)
[AMBER] Averaging simulations Naser Alijabbari (Thu Apr 02 2009 - 08:21:41 PDT)
- Re: [AMBER] Averaging simulations Carlos Simmerling (Thu Apr 02 2009 - 08:24:28 PDT)
[AMBER] Error in trajin and rms Pansy Patel (Thu Apr 02 2009 - 11:58:47 PDT)
- RE: [AMBER] Error in trajin and rms iccy liu (Thu Apr 02 2009 - 12:19:16 PDT)
  - RE: [AMBER] Error in trajin and rms Pansy Patel (Thu Apr 02 2009 - 12:25:58 PDT)
- Re: [AMBER] Error in trajin and rms Carlos Simmerling (Thu Apr 02 2009 - 12:19:39 PDT)
[AMBER] parallel installation of amber on sun Per Jr. Greisen (Thu Apr 02 2009 - 12:02:47 PDT)
- Re: [AMBER] parallel installation of amber on sun Atro Tossavainen (Thu Apr 02 2009 - 13:23:05 PDT)
  - Re: [AMBER] parallel installation of amber on sun Per Jr. Greisen (Thu Apr 02 2009 - 13:38:54 PDT)
- Re: [AMBER] parallel installation of amber on sun Atro Tossavainen (Fri Apr 03 2009 - 02:39:25 PDT)
  - Re: [AMBER] parallel installation of amber on sun Per Jr. Greisen (Fri Apr 03 2009 - 03:22:45 PDT)
    - Re: [AMBER] parallel installation of amber on sun Atro Tossavainen (Fri Apr 03 2009 - 14:40:42 PDT)
    - Re: [AMBER] parallel installation of amber on sun Atro Tossavainen (Fri Apr 03 2009 - 15:33:52 PDT)
[AMBER] long polymer chain and image command in ptraj iccy liu (Thu Apr 02 2009 - 12:11:26 PDT)
- Re: [AMBER] long polymer chain and image command in ptraj Karl Kirschner (Mon Apr 06 2009 - 01:15:00 PDT)
[AMBER] Contour plot Beale, John (Thu Apr 02 2009 - 12:31:22 PDT)
- Re: [AMBER] Contour plot Gustavo Seabra (Thu Apr 02 2009 - 12:47:14 PDT)
[AMBER] How to delete the frames at specific intervals Mannan (Thu Apr 02 2009 - 18:16:49 PDT)
- Re: [AMBER] How to delete the frames at specific intervals Bala subramanian (Fri Apr 03 2009 - 02:55:35 PDT)
[AMBER] How to find out residence time of water molecules Mannan (Thu Apr 02 2009 - 18:52:36 PDT)
- Re: [AMBER] How to find out residence time of water molecules Bala subramanian (Thu Apr 02 2009 - 23:12:18 PDT)
- Re: [AMBER] How to find out residence time of water molecules Hannes Loeffler (Fri Apr 03 2009 - 00:31:32 PDT)
[AMBER] (no subject) chenquan (Fri Apr 03 2009 - 03:12:14 PDT)
- Re: [AMBER] (no subject) David A. Case (Fri Apr 03 2009 - 05:17:36 PDT)
[AMBER] How to create parameter file for unknown residue nicholus bhattacharjee (Fri Apr 03 2009 - 03:33:03 PDT)
- Re: [AMBER] How to create parameter file for unknown residue Marius Retegan (Fri Apr 03 2009 - 03:50:30 PDT)
[AMBER] Could not find angle parameter chenquan (Fri Apr 03 2009 - 03:46:47 PDT)
- Re: [AMBER] Could not find angle parameter Marius Retegan (Fri Apr 03 2009 - 03:58:47 PDT)
[AMBER] antechamber & multiple low-energy conformations Alessandro Nascimento (Fri Apr 03 2009 - 05:01:39 PDT)
[AMBER] amber9 serial compilation issues Francesco Pietra (Fri Apr 03 2009 - 11:38:12 PDT)
- Re: [AMBER] amber9 serial compilation issues David A. Case (Fri Apr 03 2009 - 13:01:02 PDT)
  - Re: [AMBER] amber9 serial compilation issues Francesco Pietra (Fri Apr 03 2009 - 15:04:17 PDT)
[AMBER] NALA-ALA-CALA peptide with antechamber Alan (Fri Apr 03 2009 - 09:33:17 PDT)
- Re: [AMBER] NALA-ALA-CALA peptide with antechamber David A. Case (Sat Apr 04 2009 - 06:04:32 PDT)
[AMBER] ptraj problem Ed Pate (Fri Apr 03 2009 - 13:13:37 PDT)
- Re: [AMBER] ptraj problem Thomas Cheatham III (Fri Apr 03 2009 - 13:23:21 PDT)
[AMBER] Generate AM1-CM2 charges using antechamber Sishi Tang (Fri Apr 03 2009 - 15:36:46 PDT)
[AMBER] parameter for amoeba Hemant Kumar (Sat Apr 04 2009 - 04:46:01 PDT)
Re: [AMBER] problem in installing AMBER10 Dr. Debaprasad Giri (Sat Apr 04 2009 - 05:13:46 PDT)
[AMBER] LYN again Marius Retegan (Sat Apr 04 2009 - 06:12:09 PDT)
- Re: [AMBER] LYN again FyD (Sun Apr 05 2009 - 12:24:27 PDT)
  - Re: [AMBER] LYN again Marius Retegan (Mon Apr 06 2009 - 06:55:24 PDT)
    - Re: [AMBER] LYN again FyD (Mon Apr 06 2009 - 07:26:14 PDT)
Re: [AMBER] Umbrella test David A. Case (Sat Apr 04 2009 - 06:12:13 PDT)
[AMBER] deffision Nancy (Sat Apr 04 2009 - 07:30:50 PDT)
[AMBER] error in MM PBSA Vikas Sharma (Sat Apr 04 2009 - 10:06:57 PDT)
- Re: [AMBER] error in MM PBSA Hemant Gangwar (Sat Apr 04 2009 - 10:08:08 PDT)
- Re: [AMBER] error in MM PBSA David A. Case (Sat Apr 04 2009 - 14:16:42 PDT)
[AMBER] error in MM PBSA Vikas Sharma (Sat Apr 04 2009 - 23:09:35 PDT)
[AMBER] error in MM PBSA Vikas Sharma (Sun Apr 05 2009 - 21:27:21 PDT)
[AMBER] pmemd compilation/make failed - mkl_vml_service_threader_z_1i_c_1o Vijay Manickam Achari (Mon Apr 06 2009 - 00:27:24 PDT)
- Re: [AMBER] pmemd compilation/make failed -mkl_vml_service_threader_z_1i_c_1o Robert Duke (Mon Apr 06 2009 - 07:25:14 PDT)
  - Re: [AMBER] pmemd compilation/make failed -mkl_vml_service_threader_z_1i_c_1o Vijay Manickam Achari (Mon Apr 06 2009 - 21:25:36 PDT)
    - Re: [AMBER] pmemd compilation/make failed-mkl_vml_service_threader_z_1i_c_1o Robert Duke (Tue Apr 07 2009 - 05:43:36 PDT)
[AMBER] sander.MPI parallel run problem Dechang Li (Mon Apr 06 2009 - 00:44:12 PDT)
- Re: [AMBER] sander.MPI parallel run problem Carlos Simmerling (Mon Apr 06 2009 - 03:09:11 PDT)
  - Re: Re: [AMBER] sander.MPI parallel run problem Dechang Li (Mon Apr 06 2009 - 03:56:53 PDT)
    - Re: Re: [AMBER] sander.MPI parallel run problem Carlos Simmerling (Mon Apr 06 2009 - 04:02:13 PDT)
    - Re: Re: Re: [AMBER] sander.MPI parallel run problem Dechang Li (Mon Apr 06 2009 - 04:09:04 PDT)
[AMBER] faulty .rst file with "************" signs for the coordinates of a certain molecule. Soni Mufaddal Saifee (Mon Apr 06 2009 - 02:07:51 PDT)
- Re: [AMBER] faulty .rst file with "************" signs for the coordinates of a certain molecule. Carlos Simmerling (Mon Apr 06 2009 - 03:07:09 PDT)
  - Re: [AMBER] faulty .rst file with "************" signs for the coordinates of a certain molecule. Soni Mufaddal Saifee (Tue Apr 07 2009 - 21:19:25 PDT)
[AMBER] MM-PBSA error while running heat.in Vikas Sharma (Mon Apr 06 2009 - 02:32:55 PDT)
[AMBER] ssh and make test.parallel Francesco Pietra (Mon Apr 06 2009 - 02:58:39 PDT)
- Re: [AMBER] ssh and make test.parallel Atro Tossavainen (Mon Apr 06 2009 - 03:33:21 PDT)
  - Re: [AMBER] ssh and make test.parallel Francesco Pietra (Mon Apr 06 2009 - 07:29:19 PDT)
    - Re: [AMBER] ssh and make test.parallel Atro Tossavainen (Mon Apr 06 2009 - 13:21:07 PDT)
    - [AMBER] number_rec_numbers in mm_pbsa Zhu, Yong-Liang (Mon Apr 06 2009 - 16:52:06 PDT)
    - 回复： [AMBER] number_rec_numbers in mm_pbsa 廖青华 (Mon Apr 06 2009 - 17:18:54 PDT)
    - Re: [AMBER] ssh and make test.parallel Francesco Pietra (Wed Apr 08 2009 - 00:19:36 PDT)
[AMBER] problem with secstruct action command in ptraj nicholus bhattacharjee (Mon Apr 06 2009 - 04:49:44 PDT)
[AMBER] testing RRR with antechamber Alan (Mon Apr 06 2009 - 05:10:27 PDT)
[AMBER] zwitterionic form of ARG and antechamber Alan (Mon Apr 06 2009 - 05:33:31 PDT)
[AMBER] Amber with AMOEBA force-field Tomasio, Susana (Mon Apr 06 2009 - 05:41:18 PDT)
- Re: [AMBER] Amber with AMOEBA force-field David A. Case (Mon Apr 06 2009 - 05:47:11 PDT)
- Re: [AMBER] Amber with AMOEBA force-field Wei Zhang (Mon Apr 06 2009 - 05:48:28 PDT)
- RE: [AMBER] Amber with AMOEBA force-field Tomasio, Susana (Mon Apr 06 2009 - 05:49:28 PDT)
  - Re: [AMBER] Amber with AMOEBA force-field Wei Zhang (Mon Apr 06 2009 - 05:55:59 PDT)
- RE: [AMBER] Amber with AMOEBA force-field Tomasio, Susana (Mon Apr 06 2009 - 05:52:01 PDT)
  - Re: [AMBER] Amber with AMOEBA force-field Wei Zhang (Mon Apr 06 2009 - 05:57:21 PDT)
  - Re: [AMBER] Amber with AMOEBA force-field David A. Case (Mon Apr 06 2009 - 06:00:47 PDT)
- RE: [AMBER] Amber with AMOEBA force-field Tomasio, Susana (Mon Apr 06 2009 - 06:14:22 PDT)
- RE: [AMBER] Amber with AMOEBA force-field Tomasio, Susana (Mon Apr 06 2009 - 06:40:49 PDT)
[AMBER] Sander waleed_zalloum.yahoo.com (Mon Apr 06 2009 - 06:17:34 PDT)
[AMBER] MM-PBSA: decompose energy error Lucilla Angeli (Mon Apr 06 2009 - 07:35:58 PDT)
[AMBER] Sander Stalling Steve Seibold (Mon Apr 06 2009 - 09:21:51 PDT)
- RE: [AMBER] Sander Stalling Ross Walker (Mon Apr 06 2009 - 09:58:58 PDT)
- [AMBER] sequence function taufik.alsarraj.utoronto.ca (Mon Apr 06 2009 - 10:03:20 PDT)
  - Re: [AMBER] sequence function taufik.alsarraj.utoronto.ca (Mon Apr 06 2009 - 10:06:50 PDT)
- Re: [AMBER] Sander Stalling Robert Duke (Mon Apr 06 2009 - 09:57:18 PDT)
[AMBER] Do I need to modify the cap residues nicholus bhattacharjee (Mon Apr 06 2009 - 09:45:20 PDT)
- RE: [AMBER] Do I need to modify the cap residues Ross Walker (Mon Apr 06 2009 - 10:00:05 PDT)
  - Re: [AMBER] Do I need to modify the cap residues nicholus bhattacharjee (Mon Apr 06 2009 - 10:19:41 PDT)
    - Re: [AMBER] Do I need to modify the cap residues David A. Case (Mon Apr 06 2009 - 11:57:02 PDT)
    - Re: [AMBER] Do I need to modify the cap residues nicholus bhattacharjee (Mon Apr 06 2009 - 21:51:22 PDT)
    - RE: [AMBER] Do I need to modify the cap residues Ross Walker (Mon Apr 06 2009 - 21:59:37 PDT)
[AMBER] Negative "number of measurements" in PTRAJ Jenny Iskrenova (Mon Apr 06 2009 - 10:28:59 PDT)
- Re: [AMBER] Negative "number of measurements" in PTRAJ Thomas Cheatham (Tue Apr 07 2009 - 09:57:28 PDT)
[AMBER] Amber on GPU Sasha Buzko (Mon Apr 06 2009 - 17:56:31 PDT)
- RE: [AMBER] Amber on GPU Ross Walker (Mon Apr 06 2009 - 18:14:07 PDT)
  - Re: [AMBER] Amber on GPU Sasha Buzko (Mon Apr 06 2009 - 23:11:24 PDT)
  - Re: [AMBER] Amber on GPU Sasha Buzko (Thu Apr 09 2009 - 17:54:29 PDT)
  - [AMBER] MD on GPU: an existing commercial implementation Sasha Buzko (Sat Apr 11 2009 - 17:47:46 PDT)
[AMBER] deffision coefficient Nancy (Mon Apr 06 2009 - 18:18:32 PDT)
- Re: [AMBER] deffision coefficient David A. Case (Mon Apr 06 2009 - 19:16:39 PDT)
[AMBER] A question about SMD force constant Jackie. J. Shen (Mon Apr 06 2009 - 18:40:13 PDT)
- Re: [AMBER] A question about SMD force constant Carlos Simmerling (Tue Apr 07 2009 - 03:32:09 PDT)
[AMBER] ambmask question Ed Pate (Mon Apr 06 2009 - 21:36:40 PDT)
[AMBER] Problems with running two separate jobs in the same time Antonija Tomić (Tue Apr 07 2009 - 01:08:53 PDT)
- RE: [AMBER] Problems with running two separate jobs in the same time Ross Walker (Tue Apr 07 2009 - 08:01:14 PDT)
  - RE: [AMBER] Problems with running two separate jobs in the same time Antonija Tomić (Thu Apr 09 2009 - 03:33:03 PDT)
[AMBER] how to add charge in metal ion bharat lakhani (Tue Apr 07 2009 - 02:11:23 PDT)
- RE: [AMBER] how to add charge in metal ion Ross Walker (Tue Apr 07 2009 - 08:01:14 PDT)
  - Re: [AMBER] how to add charge in metal ion bharat lakhani (Tue Apr 14 2009 - 05:49:44 PDT)
[AMBER] missing violations of the covalent geometry Helena P M Tossavainen (Tue Apr 07 2009 - 02:36:44 PDT)
- Re: [AMBER] missing violations of the covalent geometry David A. Case (Tue Apr 07 2009 - 04:10:42 PDT)
  - Re: [AMBER] missing violations of the covalent geometry Helena P M Tossavainen (Tue Apr 07 2009 - 05:10:16 PDT)
[AMBER] errors while testing Per Jr. Greisen (Tue Apr 07 2009 - 03:00:19 PDT)
- Re: [AMBER] errors while testing Atro Tossavainen (Tue Apr 07 2009 - 03:18:08 PDT)
  - Re: [AMBER] errors while testing Per Jr. Greisen (Wed Apr 08 2009 - 04:06:40 PDT)
[AMBER] Problem with CAP residues Tomasio, Susana (Tue Apr 07 2009 - 03:17:27 PDT)
- Re: [AMBER] Problem with CAP residues FyD (Tue Apr 07 2009 - 04:01:35 PDT)
[AMBER] TI production runs stop after a certain Step number Hannes Wallnoefer (Tue Apr 07 2009 - 04:48:45 PDT)
- Re: [AMBER] TI production runs stop after a certain Step number steinbrt.rci.rutgers.edu (Tue Apr 07 2009 - 07:49:57 PDT)
  - Re: [AMBER] TI production runs stop after a certain Step number Hannes Wallnoefer (Wed Apr 08 2009 - 04:48:31 PDT)
    - Re: [AMBER] TI production runs stop after a certain Step number steinbrt.rci.rutgers.edu (Wed Apr 08 2009 - 07:35:11 PDT)
    - Re: [AMBER] TI production runs stop after a certain Step number Hannes Wallnoefer (Wed Apr 08 2009 - 08:14:32 PDT)
- Re: [AMBER] TI production runs stop after a certain Step number Ilyas Yildirim (Tue Apr 07 2009 - 12:08:31 PDT)
Re: [AMBER] pmemd compilation/makefailed-mkl_vml_service_threader_z_1i_c_1o Robert Duke (Tue Apr 07 2009 - 05:55:00 PDT)
- Re: [AMBER] pmemd compilation/makefailed-mkl_vml_service_threader_z_1i_c_1o Vijay Manickam Achari (Tue Apr 07 2009 - 23:27:46 PDT)
  - Re: [AMBER] pmemdcompilation/makefailed-mkl_vml_service_threader_z_1i_c_1o Robert Duke (Wed Apr 08 2009 - 05:13:23 PDT)
  - Re: [AMBER] pmemdcompilation/makefailed-mkl_vml_service_threader_z_1i_c_1o Robert Duke (Wed Apr 08 2009 - 06:35:49 PDT)
    - RE: [AMBER] pmemdcompilation/makefailed-mkl_vml_service_threade_z_1i_c_1o Ross Walker (Wed Apr 08 2009 - 07:53:31 PDT)
    - RE: [AMBER] pmemdcompilation/makefailed-mkl_vml_service_threade_z_1i_c_1o Vijay Manickam Achari (Thu Apr 09 2009 - 02:55:53 PDT)
[AMBER] test/amoeba - forrtl: severe (64): input conversion error Tomasio, Susana (Tue Apr 07 2009 - 08:16:08 PDT)
- Re: [AMBER] test/amoeba - forrtl: severe (64): input conversion error David A. Case (Tue Apr 07 2009 - 09:29:18 PDT)
RE: [AMBER] test/amoeba - forrtl: severe (64): input conversion error Tomasio, Susana (Tue Apr 07 2009 - 09:34:57 PDT)
- Re: [AMBER] test/amoeba - forrtl: severe (64): input conversion error Wei Zhang (Tue Apr 07 2009 - 11:34:11 PDT)
- RE: [AMBER] test/amoeba - forrtl: severe (64): input conversion error Tomasio, Susana (Tue Apr 07 2009 - 12:34:26 PDT)
- RE: [AMBER] test/amoeba - forrtl: severe (64): input conversion error Tomasio, Susana (Tue Apr 07 2009 - 13:12:19 PDT)
  - Re: [AMBER] test/amoeba - forrtl: severe (64): input conversion error David A. Case (Tue Apr 07 2009 - 13:41:21 PDT)
- RE: [AMBER] test/amoeba - forrtl: severe (64): input conversion error Tomasio, Susana (Tue Apr 07 2009 - 15:45:57 PDT)
  - Re: [AMBER] test/amoeba - forrtl: severe (64): input conversion error Wei Zhang (Wed Apr 08 2009 - 08:38:50 PDT)
- RE: [AMBER] test/amoeba - forrtl: severe (64): input conversion error Tomasio, Susana (Wed Apr 08 2009 - 09:02:48 PDT)
  - [AMBER] test/amoeba: forrtl: error (78): process killed (SIGTERM) Tomasio, Susana (Wed Apr 29 2009 - 10:45:36 PDT)
    - Re: [AMBER] test/amoeba: forrtl: error (78): process killed (SIGTERM) Wei Zhang (Wed Apr 29 2009 - 11:00:28 PDT)
    - RE: [AMBER] test/amoeba: forrtl: error (78): process killed (SIGTERM) Tomasio, Susana (Wed Apr 29 2009 - 13:15:02 PDT)
[AMBER] Testing parallel amber10: no libmkl_lapack.so Francesco Pietra (Tue Apr 07 2009 - 11:56:25 PDT)
- [AMBER] prmtop residue format taufik.alsarraj.utoronto.ca (Tue Apr 07 2009 - 13:04:25 PDT)
  - Re: [AMBER] prmtop residue format David A. Case (Tue Apr 07 2009 - 13:35:40 PDT)
    - Re: [AMBER] top2mol2 taufik.alsarraj.utoronto.ca (Tue Apr 07 2009 - 15:39:34 PDT)
    - [AMBER] ptraj randomizeions taufik.alsarraj.utoronto.ca (Tue Apr 07 2009 - 16:32:23 PDT)
- Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so Atro Tossavainen (Wed Apr 08 2009 - 02:35:17 PDT)
  - Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so Francesco Pietra (Wed Apr 08 2009 - 03:03:09 PDT)
    - Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so Atro Tossavainen (Wed Apr 08 2009 - 04:20:27 PDT)
    - Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so Francesco Pietra (Wed Apr 08 2009 - 08:14:43 PDT)
    - Fwd: [AMBER] Testing parallel amber10: no libmkl_lapack.so Francesco Pietra (Wed Apr 08 2009 - 08:23:58 PDT)
    - Re: Fwd: [AMBER] Testing parallel amber10: no libmkl_lapack.so Atro Tossavainen (Wed Apr 08 2009 - 15:25:54 PDT)
    - Re: Fwd: [AMBER] Testing parallel amber10: no libmkl_lapack.so Francesco Pietra (Wed Apr 08 2009 - 16:20:02 PDT)
    - Re: Fwd: [AMBER] Testing parallel amber10: no libmkl_lapack.so Atro Tossavainen (Wed Apr 08 2009 - 16:36:53 PDT)
    - Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so M. L. Dodson (Wed Apr 08 2009 - 09:06:09 PDT)
    - Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so Atro Tossavainen (Wed Apr 08 2009 - 15:24:52 PDT)
    - Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so Francesco Pietra (Wed Apr 08 2009 - 16:17:38 PDT)
    - Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so Atro Tossavainen (Wed Apr 08 2009 - 16:39:30 PDT)
    - Re: [AMBER] Testing parallel amber10: no libmkl_lapack.so Francesco Pietra (Sun Apr 19 2009 - 07:36:02 PDT)
[AMBER] PBSA Radii option quantum_mania.yahoo.com (Tue Apr 07 2009 - 12:31:18 PDT)
- [AMBER] Source of new CYX residue parameters in ff03ua Chris Moth (Tue Apr 07 2009 - 12:48:46 PDT)
  - [AMBER] Source of new CYX residue parameters in ff03ua Chris Moth (Tue Apr 14 2009 - 17:42:33 PDT)
  - RE: [AMBER] Source of new CYX residue parameters in ff03ua Ross Walker (Tue Apr 14 2009 - 21:08:14 PDT)
Re: [AMBER] specification of antechamber AC file format? Nicholas Musolino (Tue Apr 07 2009 - 12:43:57 PDT)
- Re: [AMBER] specification of antechamber AC file format? Nicholas Musolino (Wed Apr 15 2009 - 15:07:32 PDT)
  - Re: [AMBER] specification of antechamber AC file format? David A. Case (Thu Apr 16 2009 - 05:29:46 PDT)
    - Re: [AMBER] specification of antechamber AC file format? Nicholas Musolino (Thu Apr 16 2009 - 06:18:32 PDT)
[AMBER] MMPB(GB)SA on trimer quantum_mania.yahoo.com (Tue Apr 07 2009 - 18:01:39 PDT)
[AMBER] compare MMPBSA result m m (Tue Apr 07 2009 - 23:28:06 PDT)
- RE: [AMBER] compare MMPBSA result Ray Luo (Wed Apr 08 2009 - 10:02:41 PDT)
[AMBER] problem with antechamber aneesh cna (Tue Apr 07 2009 - 23:32:32 PDT)
[AMBER] please help me out bharat lakhani (Wed Apr 08 2009 - 02:18:41 PDT)
- RE: [AMBER] please help me out Ross Walker (Wed Apr 08 2009 - 08:34:51 PDT)
  - Re: [AMBER] please help me out Hugh Heldenbrand (Wed Apr 08 2009 - 08:44:54 PDT)
    - Re: [AMBER] please help me out David A. Case (Wed Apr 08 2009 - 11:10:04 PDT)
  - [AMBER] ntwr taufik.alsarraj.utoronto.ca (Wed Apr 08 2009 - 14:45:01 PDT)
    - Re: [AMBER] ntwr Carlos Simmerling (Wed Apr 08 2009 - 14:47:04 PDT)
    - Re: [AMBER] ntwr taufik.alsarraj.utoronto.ca (Wed Apr 08 2009 - 15:35:57 PDT)
    - Re: [AMBER] ntwr Carlos Simmerling (Wed Apr 08 2009 - 15:45:57 PDT)
[AMBER] Failures of tests Per Jr. Greisen (Wed Apr 08 2009 - 08:41:34 PDT)
- RE: [AMBER] Failures of tests Seetin, Matthew (Wed Apr 08 2009 - 08:57:27 PDT)
  - Re: [AMBER] Failures of tests Per Jr. Greisen (Wed Apr 08 2009 - 09:17:16 PDT)
- Re: [AMBER] Failures of tests Atro Tossavainen (Wed Apr 08 2009 - 15:43:08 PDT)
  - Re: [AMBER] Failures of tests Per Jr. Greisen (Thu Apr 09 2009 - 05:52:32 PDT)
[AMBER] Thermodynamic Integration and belly Ignacio J. General (Wed Apr 08 2009 - 12:52:51 PDT)
[AMBER] force fields Mark M Huntress (Wed Apr 08 2009 - 17:23:38 PDT)
- RE: [AMBER] force fields Ross Walker (Wed Apr 08 2009 - 17:36:05 PDT)
- Re: [AMBER] force fields Gustavo Seabra (Wed Apr 15 2009 - 05:43:49 PDT)
[AMBER] please help me out bharat lakhani (Wed Apr 08 2009 - 22:10:22 PDT)
- Re: [AMBER] please help me out David A. Case (Thu Apr 09 2009 - 04:46:12 PDT)
[AMBER] how to plot this kind of map? lnin_1431.sina.com (Thu Apr 09 2009 - 01:36:45 PDT)
- Re: [AMBER] how to plot this kind of map? Dechang Li (Thu Apr 09 2009 - 01:46:16 PDT)
Re: [AMBER] hpux sander.serial failure info David A. Case (Thu Apr 09 2009 - 04:56:51 PDT)
- Re: [AMBER] hpux sander.serial failure info David A. Case (Wed Apr 15 2009 - 05:07:45 PDT)
[AMBER] RST file waleed zalloum (Thu Apr 09 2009 - 07:06:37 PDT)
- Re: [AMBER] RST file David A. Case (Fri Apr 10 2009 - 05:21:19 PDT)
[AMBER] Release of R.E.D. Server FyD (Thu Apr 09 2009 - 01:31:30 PDT)
[AMBER] antechamber problems Jia Xu (Thu Apr 09 2009 - 10:12:44 PDT)
- Re: [AMBER] antechamber problems David A. Case (Thu Apr 09 2009 - 11:04:51 PDT)
- Re: [AMBER] antechamber problems Nicholas Musolino (Thu Apr 09 2009 - 11:03:45 PDT)
  - Re: [AMBER] antechamber problems Jia Xu (Fri Apr 10 2009 - 07:41:53 PDT)
[AMBER] Sander and multiple residues Dan Kaps (Thu Apr 09 2009 - 11:48:55 PDT)
- Re: [AMBER] Sander and multiple residues Carlos Simmerling (Thu Apr 09 2009 - 12:21:56 PDT)
  - Re: [AMBER] Sander and multiple residues Dan Kaps (Thu Apr 09 2009 - 13:02:46 PDT)
    - Re: [AMBER] Sander and multiple residues Carlos Simmerling (Thu Apr 09 2009 - 13:05:23 PDT)
    - Re: [AMBER] Sander and multiple residues Dan Kaps (Fri Apr 10 2009 - 05:56:53 PDT)
- Re: [AMBER] Sander and multiple residues Bill Ross (Thu Apr 09 2009 - 13:12:10 PDT)
  - Re: [AMBER] Sander and multiple residues Dan Kaps (Fri Apr 10 2009 - 05:57:54 PDT)
    - Re: [AMBER] Sander and multiple residues David A. Case (Fri Apr 10 2009 - 07:03:57 PDT)
    - Re: [AMBER] Sander and multiple residues Dan Kaps (Fri Apr 10 2009 - 08:01:08 PDT)
- Re: [AMBER] Sander and multiple residues Bill Ross (Fri Apr 10 2009 - 09:42:36 PDT)
  - Re: [AMBER] Sander and multiple residues Dan Kaps (Fri Apr 10 2009 - 10:46:49 PDT)
  - [AMBER] ptraj (vector and corrplane) taufik.alsarraj.utoronto.ca (Fri Apr 10 2009 - 17:45:46 PDT)
- Re: [AMBER] Sander and multiple residues Bill Ross (Fri Apr 10 2009 - 13:42:14 PDT)
[AMBER] igb=0 vs. igb=6 give different answers Hugh Heldenbrand (Thu Apr 09 2009 - 13:51:02 PDT)
- Re: [AMBER] igb=0 vs. igb=6 give different answers David A. Case (Thu Apr 09 2009 - 19:48:31 PDT)
[AMBER] basepair balaji nagarajan (Thu Apr 09 2009 - 22:30:57 PDT)
- Re: [AMBER] basepair Bala subramanian (Tue Apr 14 2009 - 04:09:21 PDT)
[AMBER] Amber 1.2 tools test suite failure? Jim Parker (Sat Apr 11 2009 - 10:41:54 PDT)
- RE: [AMBER] Amber 1.2 tools test suite failure? Ross Walker (Sat Apr 11 2009 - 11:00:45 PDT)
  - Re: [AMBER] Solved-Amber 1.2 tools test suite failure Jim Parker (Sat Apr 11 2009 - 12:29:55 PDT)
    - RE: [AMBER] Solved-Amber 1.2 tools test suite failure Ross Walker (Sat Apr 11 2009 - 12:51:13 PDT)
[AMBER] install and test Amber 10 parallel on Ubuntu 8.10 Jim Parker (Sat Apr 11 2009 - 17:20:25 PDT)
- [AMBER] Re: install and test Amber 10 parallel on Ubuntu 8.10 Jim Parker (Sat Apr 11 2009 - 21:47:19 PDT)
[AMBER] why amber10/dat/leap/gleap/ and amber10/dat/leap/parm Alan (Sun Apr 12 2009 - 02:30:15 PDT)
- Re: [AMBER] why amber10/dat/leap/gleap/ and amber10/dat/leap/parm Wei Zhang (Sun Apr 12 2009 - 06:24:47 PDT)
  - Re: [AMBER] why amber10/dat/leap/gleap/ and amber10/dat/leap/parm Alan (Sun Apr 12 2009 - 08:58:18 PDT)
[AMBER] problem with explicit solvent in TMD balaji nagarajan (Mon Apr 13 2009 - 04:37:21 PDT)
- Re: [AMBER] problem with explicit solvent in TMD Carlos Simmerling (Mon Apr 13 2009 - 04:41:41 PDT)
- RE: [AMBER] problem with explicit solvent in TMD Ross Walker (Mon Apr 13 2009 - 08:29:11 PDT)
[AMBER] Energy minimisation and NaN vivek.viv.sharma.gmail.com (Mon Apr 13 2009 - 04:55:55 PDT)
- Re: [AMBER] Energy minimisation and NaN David A. Case (Mon Apr 13 2009 - 12:28:10 PDT)
[AMBER] atom types in pdb files Dan Kaps (Mon Apr 13 2009 - 07:23:58 PDT)
- RE: [AMBER] atom types in pdb files Kristina Furse (Mon Apr 13 2009 - 09:30:05 PDT)
- Re: [AMBER] atom types in pdb files Dan Kaps (Mon Apr 13 2009 - 12:29:43 PDT)
  - Re: [AMBER] atom types in pdb files David A. Case (Mon Apr 13 2009 - 13:25:04 PDT)
[AMBER] Thermodynamic Integration and belly Ignacio J. General (Mon Apr 13 2009 - 08:24:15 PDT)
- Re: [AMBER] Thermodynamic Integration and belly steinbrt.rci.rutgers.edu (Mon Apr 13 2009 - 09:46:19 PDT)
  - Re: [AMBER] Thermodynamic Integration and belly Ignacio J. General (Mon Apr 13 2009 - 10:26:16 PDT)
[AMBER] error saving prmtop and inpcrd files of complex in MM-PBSA Vikas Sharma (Mon Apr 13 2009 - 13:11:07 PDT)
[AMBER] restrained minimization quantum_mania.yahoo.com (Mon Apr 13 2009 - 17:12:35 PDT)
- Re: [AMBER] restrained minimization David A. Case (Mon Apr 13 2009 - 19:03:11 PDT)
[AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? Marek Malý (Mon Apr 13 2009 - 20:29:17 PDT)
- RE: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? Ross Walker (Mon Apr 13 2009 - 21:10:38 PDT)
  - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? Marek Malý (Tue Apr 14 2009 - 16:18:18 PDT)
    - RE: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? Ross Walker (Tue Apr 14 2009 - 16:27:37 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? Marek Malý (Tue Apr 14 2009 - 17:40:22 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? Karl Kirschner (Wed Apr 15 2009 - 00:07:00 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? Carlos Simmerling (Wed Apr 15 2009 - 06:33:00 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? Marek Malý (Thu Apr 16 2009 - 14:25:12 PDT)
[AMBER] chosing complex in amber Vikas Sharma (Mon Apr 13 2009 - 22:18:43 PDT)
[AMBER] Questions on targeted MD with explicit solvent Hu, Shaowen (JSC-SK)[Universities Space Research Association USRA]. (Tue Apr 14 2009 - 06:51:40 PDT)
[AMBER] [qm/mm] qmcharge for acidic a.a. in proteins sychen (Tue Apr 14 2009 - 09:33:03 PDT)
- RE: [AMBER] [qm/mm] qmcharge for acidic a.a. in proteins Ross Walker (Tue Apr 14 2009 - 12:45:06 PDT)
[AMBER] antechamber and wrong net charge with gasteiger method Alan (Tue Apr 14 2009 - 10:41:30 PDT)
- Re: [AMBER] antechamber and wrong net charge with gasteiger method David A. Case (Tue Apr 14 2009 - 11:42:14 PDT)
[AMBER] my FF m m (Tue Apr 14 2009 - 15:21:38 PDT)
- Re: [AMBER] my FF David A. Case (Wed Apr 15 2009 - 05:28:16 PDT)
[AMBER] water bonding with protein Mark M Huntress (Tue Apr 14 2009 - 19:55:39 PDT)
- Re: [AMBER] water bonding with protein David A. Case (Wed Apr 15 2009 - 04:58:17 PDT)
[AMBER] hbond_ptraj_eror balaji nagarajan (Tue Apr 14 2009 - 23:53:29 PDT)
[AMBER] mean of character in frcmod.ff03 chenquan (Wed Apr 15 2009 - 05:26:38 PDT)
- RE: [AMBER] mean of character in frcmod.ff03 Ross Walker (Wed Apr 15 2009 - 07:58:31 PDT)
  - RE: [AMBER] mean of character in frcmod.ff03 chenquan (Wed Apr 15 2009 - 16:36:32 PDT)
[AMBER] help- regarding - TMD balaji nagarajan (Wed Apr 15 2009 - 09:19:59 PDT)
- RE: [AMBER] help- regarding - TMD Hu, Shaowen (JSC-SK)[Universities Space Research Association USRA]. (Wed Apr 15 2009 - 10:56:07 PDT)
  - RE: [AMBER] help- regarding - TMD balaji nagarajan (Wed Apr 15 2009 - 22:21:26 PDT)
    - RE: [AMBER] help- regarding - TMD Hu, Shaowen (JSC-SK)[Universities Space Research Association USRA]. (Thu Apr 16 2009 - 06:30:22 PDT)
    - RE: [AMBER] help- regarding - TMD balaji nagarajan (Thu Apr 16 2009 - 10:01:39 PDT)
- RE: [AMBER] help- regarding - TMD Hu, Shaowen (JSC-SK)[Universities Space Research Association USRA]. (Mon Apr 20 2009 - 08:05:38 PDT)
  - Re: [AMBER] help- regarding - TMD Carlos Simmerling (Mon Apr 20 2009 - 08:12:40 PDT)
    - RE: [AMBER] help- regarding - TMD Hu, Shaowen (JSC-SK)[Universities Space Research Association USRA]. (Mon Apr 20 2009 - 08:28:30 PDT)
    - Re: [AMBER] help- regarding - TMD Carlos Simmerling (Mon Apr 20 2009 - 08:30:52 PDT)
    - RE: [AMBER] help- regarding - TMD Hu, Shaowen (JSC-SK)[Universities Space Research Association USRA]. (Mon Apr 20 2009 - 09:21:06 PDT)
    - Re: [AMBER] help- regarding - TMD Carlos Simmerling (Tue Apr 21 2009 - 12:46:41 PDT)
    - RE: [AMBER] help- regarding - TMD Hu, Shaowen (JSC-SK)[Universities Space Research Association USRA]. (Tue Apr 21 2009 - 13:25:15 PDT)
    - Re: [AMBER] help- regarding - TMD Carlos Simmerling (Tue Apr 21 2009 - 14:23:23 PDT)
    - RE: [AMBER] help- regarding - TMD Hu, Shaowen (JSC-SK)[Universities Space Research Association USRA]. (Tue Apr 21 2009 - 15:40:36 PDT)
    - Re: [AMBER] help- regarding - TMD Carlos Simmerling (Tue Apr 21 2009 - 16:35:42 PDT)
[AMBER] please help me out bharat lakhani (Wed Apr 15 2009 - 23:41:08 PDT)
[AMBER] missing amber force field parameters Neha Gandhi (Thu Apr 16 2009 - 02:19:57 PDT)
- Re: [AMBER] missing amber force field parameters FyD (Thu Apr 16 2009 - 02:41:44 PDT)
[AMBER] pmemd in amber10 - compile failed in HPC Vijay Manickam Achari (Thu Apr 16 2009 - 03:13:49 PDT)
- Re: [AMBER] pmemd in amber10 - compile failed in HPC Robert Duke (Thu Apr 16 2009 - 05:24:45 PDT)
[AMBER] 1-4 vdW, GB MM difference Jimmy Heimdal (Thu Apr 16 2009 - 04:57:01 PDT)
- Re: [AMBER] 1-4 vdW, GB MM difference David A. Case (Thu Apr 16 2009 - 07:47:55 PDT)
[AMBER] ambertools failed - SMP IA64 Vijay Manickam Achari (Thu Apr 16 2009 - 06:17:34 PDT)
- Re: [AMBER] ambertools failed - SMP IA64 David A. Case (Thu Apr 16 2009 - 07:10:20 PDT)
[AMBER] Van der Waals atom types Antonio Morreale (Thu Apr 16 2009 - 07:39:14 PDT)
[AMBER] Amber and CHARMM summer school David A. Case (Thu Apr 16 2009 - 08:04:18 PDT)
[AMBER] Bad value during integer read by sander Collins Nganou (Thu Apr 16 2009 - 08:09:45 PDT)
[AMBER] sulfonamide parameters valeria.lapietra.unina.it (Thu Apr 16 2009 - 08:16:49 PDT)
[AMBER] polarizable force field for 18-crown-6 Gert von Helden (Thu Apr 16 2009 - 10:33:15 PDT)
- Re: [AMBER] polarizable force field for 18-crown-6 Piotr Cieplak (Fri Apr 17 2009 - 00:48:03 PDT)
[AMBER] help regarding force fields Vikas Sharma (Thu Apr 16 2009 - 23:06:32 PDT)
[AMBER] Right force fields Vikas Sharma (Thu Apr 16 2009 - 23:22:16 PDT)
- Re: [AMBER] Right force fields Patrick Schopf (Fri Apr 17 2009 - 05:48:14 PDT)
  - Re: [AMBER] Right force fields Vikas Sharma (Fri Apr 17 2009 - 06:14:04 PDT)
    - Re: [AMBER] Right force fields Patrick Schopf (Fri Apr 17 2009 - 06:34:04 PDT)
[AMBER] radius of gyration Beale, John (Fri Apr 17 2009 - 04:39:31 PDT)
[AMBER] Density in MD simulation Ibrahim Moustafa (Fri Apr 17 2009 - 09:09:16 PDT)
- Re: [AMBER] Density in MD simulation Carlos Simmerling (Fri Apr 17 2009 - 09:10:51 PDT)
  - Re: [AMBER] Density in MD simulation Ibrahim Moustafa (Fri Apr 17 2009 - 16:26:46 PDT)
[AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? quantum_mania.yahoo.com (Fri Apr 17 2009 - 10:52:28 PDT)
- Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? Lachele Foley (Lists) (Fri Apr 17 2009 - 11:13:49 PDT)
[AMBER] Backbone restraint Rilei Yu (Fri Apr 17 2009 - 19:30:38 PDT)
- Re: [AMBER] Backbone restraint Carlos Simmerling (Fri Apr 17 2009 - 19:35:26 PDT)
- Re: [AMBER] Backbone restraint Rilei Yu (Fri Apr 17 2009 - 20:29:12 PDT)
  - Re: [AMBER] Backbone restraint Carlos Simmerling (Sat Apr 18 2009 - 04:08:39 PDT)
    - Re: Re: [AMBER] Backbone restraint Rilei Yu (Mon Apr 20 2009 - 18:21:09 PDT)
  - Re: Re: [AMBER] Backbone restraint Jackie. J. Shen (Mon Apr 20 2009 - 18:12:13 PDT)
[AMBER] help_me to know the reason balaji nagarajan (Fri Apr 17 2009 - 21:30:07 PDT)
- Re: [AMBER] help_me to know the reason Carlos Simmerling (Sat Apr 18 2009 - 03:53:50 PDT)
[AMBER] please read this mail bharat lakhani (Sat Apr 18 2009 - 00:38:12 PDT)
- Re: [AMBER] please read this mail David A. Case (Sat Apr 18 2009 - 06:01:08 PDT)
[AMBER] about saltcon zgong.hust (Sat Apr 18 2009 - 19:45:53 PDT)
- Re: [AMBER] about saltcon Carlos Simmerling (Sun Apr 19 2009 - 03:49:57 PDT)
[AMBER] Atom type error Vikas Sharma (Sun Apr 19 2009 - 02:48:01 PDT)
- Re: [AMBER] Atom type error nicholus bhattacharjee (Sun Apr 19 2009 - 03:55:37 PDT)
  - Re: [AMBER] Atom type error Carlos Simmerling (Sun Apr 19 2009 - 04:06:07 PDT)
    - Re: [AMBER] Atom type error Vikas Sharma (Sun Apr 19 2009 - 09:49:53 PDT)
  - Re: [AMBER] Atom type error Vikas Sharma (Sun Apr 19 2009 - 09:50:28 PDT)
    - Re: [AMBER] Atom type error David A. Case (Sun Apr 19 2009 - 10:41:11 PDT)
    - Re: [AMBER] Atom type error Vikas Sharma (Sun Apr 19 2009 - 11:33:36 PDT)
    - RE: [AMBER] Atom type error Ross Walker (Sun Apr 19 2009 - 14:23:38 PDT)
    - Re: [AMBER] Atom type error Vikas Sharma (Mon Apr 20 2009 - 03:46:34 PDT)
    - Re: [AMBER] Atom type error Vikas Sharma (Mon Apr 20 2009 - 23:55:24 PDT)
[AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail Marek Malý (Mon Apr 20 2009 - 04:52:36 PDT)
- Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail Karl Kirschner (Mon Apr 20 2009 - 05:27:45 PDT)
  - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail Marek Malý (Mon Apr 20 2009 - 20:52:46 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail Karl Kirschner (Tue Apr 21 2009 - 00:24:18 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail Marek Malý (Tue Apr 21 2009 - 19:31:34 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail Karl Kirschner (Thu Apr 23 2009 - 04:43:31 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail Marek Malý (Thu Apr 23 2009 - 06:41:03 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail Karl Kirschner (Thu Apr 23 2009 - 06:54:14 PDT)
    - Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail Marek Malý (Thu Apr 23 2009 - 07:30:07 PDT)
- Re: [AMBER] Possibility to use ff99 + GAFF + GLYCAM_06 in one time for complex system ? - Last detail FyD (Mon Apr 20 2009 - 07:50:12 PDT)
Re: [AMBER] Creating conditions for biased MD Francesco Pietra (Mon Apr 20 2009 - 10:31:52 PDT)
- Re: [AMBER] Creating conditions for biased MD Carlos Simmerling (Mon Apr 20 2009 - 11:46:41 PDT)
  - Re: [AMBER] Creating conditions for biased MD Francesco Pietra (Tue Apr 21 2009 - 11:40:35 PDT)
    - Re: [AMBER] Creating conditions for biased MD Carlos Simmerling (Tue Apr 21 2009 - 12:44:03 PDT)
    - Re: [AMBER] Creating conditions for biased MD Francesco Pietra (Tue Apr 21 2009 - 14:29:36 PDT)
    - Re: [AMBER] Creating conditions for biased MD Carlos Simmerling (Tue Apr 21 2009 - 14:32:09 PDT)
    - Re: [AMBER] Creating conditions for biased MD Francesco Pietra (Tue Apr 21 2009 - 14:49:14 PDT)
    - Re: [AMBER] Creating conditions for biased MD Francesco Pietra (Wed Apr 22 2009 - 03:16:11 PDT)
- Re: [AMBER] Creating conditions for biased MD Bill Ross (Wed Apr 22 2009 - 09:19:20 PDT)
  - Re: [AMBER] Creating conditions for biased MD Francesco Pietra (Wed Apr 22 2009 - 11:01:39 PDT)
[AMBER] Partial interactions Ignacio J. General (Mon Apr 20 2009 - 14:07:24 PDT)
- Re: [AMBER] Partial interactions steinbrt.rci.rutgers.edu (Mon Apr 20 2009 - 14:47:35 PDT)
  - Re: [AMBER] Partial interactions Ignacio J. General (Tue Apr 21 2009 - 07:31:26 PDT)
    - Re: [AMBER] Partial interactions steinbrt.rci.rutgers.edu (Tue Apr 21 2009 - 08:17:55 PDT)
    - Re: [AMBER] Partial interactions Ignacio J. General (Wed Apr 22 2009 - 12:02:00 PDT)
    - Re: [AMBER] Partial interactions steinbrt.rci.rutgers.edu (Wed Apr 22 2009 - 19:55:52 PDT)
    - Re: [AMBER] Partial interactions Ignacio J. General (Fri Apr 24 2009 - 07:49:07 PDT)
    - Re: [AMBER] Partial interactions steinbrt.rci.rutgers.edu (Fri Apr 24 2009 - 09:20:21 PDT)
    - Re: [AMBER] Partial interactions Ignacio J. General (Fri Apr 24 2009 - 10:11:31 PDT)
    - Re: [AMBER] Partial interactions steinbrt.rci.rutgers.edu (Fri Apr 24 2009 - 10:48:58 PDT)
[AMBER] My step size Vikas Sharma (Mon Apr 20 2009 - 23:50:16 PDT)
- RE: [AMBER] My step size Ross Walker (Tue Apr 21 2009 - 04:27:07 PDT)
  - Re: [AMBER] My step size Vikas Sharma (Tue Apr 21 2009 - 08:01:25 PDT)
  - Re: [AMBER] My step size Vikas Sharma (Tue Apr 21 2009 - 21:49:47 PDT)
[AMBER] atom numbers Vikas Sharma (Tue Apr 21 2009 - 04:12:27 PDT)
- Re: [AMBER] atom numbers David A. Case (Tue Apr 21 2009 - 04:54:37 PDT)
  - Re: [AMBER] atom numbers Vikas Sharma (Tue Apr 21 2009 - 08:33:12 PDT)
    - Re: [AMBER] atom numbers David A. Case (Tue Apr 21 2009 - 08:52:22 PDT)
    - Re: [AMBER] atom numbers Vikas Sharma (Tue Apr 21 2009 - 09:58:41 PDT)
    - Re: [AMBER] atom numbers David A. Case (Tue Apr 21 2009 - 10:26:32 PDT)
- Re: [AMBER] atom numbers Vikas Sharma (Tue Apr 21 2009 - 10:15:07 PDT)
- Re: [AMBER] atom numbers Vikas Sharma (Tue Apr 21 2009 - 11:36:35 PDT)
[AMBER] Number of LES copies in ptraj Thomas Exner (Tue Apr 21 2009 - 08:28:41 PDT)
[AMBER] Set start timestep for mdcrd traj output quantum_mania.yahoo.com (Tue Apr 21 2009 - 09:38:53 PDT)
- Re: [AMBER] Set start timestep for mdcrd traj output Carlos Simmerling (Tue Apr 21 2009 - 16:26:02 PDT)
  - Re: [AMBER] Set start timestep for mdcrd traj output Dong Xu (Tue Apr 21 2009 - 16:44:50 PDT)
[AMBER] Set start timestep for mdcrd traj output quantum_mania.yahoo.com (Tue Apr 21 2009 - 09:31:45 PDT)
[AMBER] Flexible ring simulation Dong Xu (Tue Apr 21 2009 - 16:04:55 PDT)
[AMBER] per atom energies in sander/pmemd Tamara Rogers (Tue Apr 21 2009 - 16:41:27 PDT)
[AMBER] Disulfide bond Dong Xu (Tue Apr 21 2009 - 18:37:46 PDT)
- Re: [AMBER] Disulfide bond Wei Zhang (Tue Apr 21 2009 - 18:46:19 PDT)
  - Re: [AMBER] Disulfide bond Dong Xu (Tue Apr 21 2009 - 19:41:02 PDT)
    - Re: [AMBER] Disulfide bond Wei Zhang (Tue Apr 21 2009 - 20:30:36 PDT)
    - Re: [AMBER] Disulfide bond quantum_mania.yahoo.com (Tue Apr 21 2009 - 22:25:45 PDT)
    - Re: [AMBER] Disulfide bond Wei Zhang (Wed Apr 22 2009 - 08:00:02 PDT)
[AMBER] bintraj and amber 10 Naser Alijabbari (Tue Apr 21 2009 - 23:31:51 PDT)
- RE: [AMBER] bintraj and amber 10 Ross Walker (Wed Apr 22 2009 - 03:59:47 PDT)
  - Re: [AMBER] bintraj and amber 10 Naser Alijabbari (Wed Apr 22 2009 - 18:05:21 PDT)
    - RE: [AMBER] bintraj and amber 10 Ross Walker (Thu Apr 23 2009 - 06:31:08 PDT)
    - Re: [AMBER] bintraj and amber 10 Chris Moth (Thu Apr 23 2009 - 10:46:44 PDT)
    - Re: [AMBER] bintraj and amber 10 Naser Alijabbari (Thu Apr 23 2009 - 17:37:06 PDT)
    - Re: [AMBER] bintraj and amber 10 Naser Alijabbari (Sat Apr 25 2009 - 11:47:34 PDT)
[AMBER] help regarding step size Vikas Sharma (Wed Apr 22 2009 - 01:57:31 PDT)
- Re: [AMBER] help regarding step size Carlos Simmerling (Wed Apr 22 2009 - 03:13:54 PDT)
  - Re: [AMBER] help regarding step size Vikas Sharma (Wed Apr 22 2009 - 03:50:27 PDT)
    - Re: [AMBER] help regarding step size Carlos Simmerling (Wed Apr 22 2009 - 04:03:28 PDT)
    - Re: [AMBER] help regarding step size Vikas Sharma (Wed Apr 22 2009 - 21:40:33 PDT)
[AMBER] uncharged c and n terminal amino acids Christopher Materese (Wed Apr 22 2009 - 11:05:38 PDT)
- Re: [AMBER] uncharged c and n terminal amino acids David A. Case (Wed Apr 22 2009 - 11:16:19 PDT)
[AMBER] Problem with RNA hairpin unwinding in explicit water Sasha Buzko (Wed Apr 22 2009 - 14:55:58 PDT)
- RE: [AMBER] Problem with RNA hairpin unwinding in explicit water Seetin, Matthew (Wed Apr 22 2009 - 15:22:29 PDT)
- Re: [AMBER] Problem with RNA hairpin unwinding in explicit water Carlos Simmerling (Wed Apr 22 2009 - 15:25:47 PDT)
  - Re: [AMBER] Problem with RNA hairpin unwinding in explicit water Sasha Buzko (Wed Apr 22 2009 - 15:34:35 PDT)
    - Re: [AMBER] Problem with RNA hairpin unwinding in explicit water Carlos Simmerling (Wed Apr 22 2009 - 15:53:33 PDT)
    - RE: [AMBER] Problem with RNA hairpin unwinding in explicit water matthew_seetin.urmc.rochester.edu (Wed Apr 22 2009 - 16:59:02 PDT)
    - Re: [AMBER] Problem with RNA hairpin unwinding in explicit water Sasha Buzko (Wed Apr 22 2009 - 16:59:14 PDT)
    - Re: [AMBER] Problem with RNA hairpin unwinding in explicit water Sasha Buzko (Fri Apr 24 2009 - 10:20:13 PDT)
- Re: [AMBER] Problem with RNA hairpin unwinding in explicit water Thomas Cheatham III (Wed Apr 22 2009 - 15:56:25 PDT)
  - Re: [AMBER] Problem with RNA hairpin unwinding in explicit water Sasha Buzko (Wed Apr 22 2009 - 16:10:55 PDT)
[AMBER] Amber Sulfate Ion Parameters Gary Clark (Wed Apr 22 2009 - 15:31:00 PDT)
- Re: [AMBER] Amber Sulfate Ion Parameters FyD (Wed Apr 22 2009 - 22:18:28 PDT)
- Re: [AMBER] Amber Sulfate Ion Parameters FyD (Wed Apr 22 2009 - 23:07:40 PDT)
  - Re: [AMBER] Amber Sulfate Ion Parameters Gary Clark (Thu Apr 23 2009 - 12:55:24 PDT)
[AMBER] error in output file Vikas Sharma (Thu Apr 23 2009 - 04:39:42 PDT)
- Re: [AMBER] error in output file Carlos Simmerling (Thu Apr 23 2009 - 04:42:02 PDT)
  - Re: [AMBER] error in output file Vikas Sharma (Thu Apr 23 2009 - 04:58:24 PDT)
    - Re: [AMBER] error in output file Hemant Kumar (Thu Apr 23 2009 - 05:20:25 PDT)
    - Re: [AMBER] error in output file Vikas Sharma (Thu Apr 23 2009 - 06:33:49 PDT)
    - RE: [AMBER] error in output file Ross Walker (Thu Apr 23 2009 - 06:28:18 PDT)
    - Re: [AMBER] error in output file Vikas Sharma (Thu Apr 23 2009 - 06:55:20 PDT)
[AMBER] nmod no run proprely in mmbsa mohamed mohamed (Thu Apr 23 2009 - 05:20:36 PDT)
- Re: [AMBER] nmod no run proprely in mmbsa David A. Case (Thu Apr 23 2009 - 05:47:44 PDT)
[AMBER] Regarding syntax for freezing different atoms Jorgen Simonsen (Thu Apr 23 2009 - 05:50:43 PDT)
- RE: [AMBER] Regarding syntax for freezing different atoms Ross Walker (Thu Apr 23 2009 - 06:24:55 PDT)
[AMBER] Amber Installation problem 주태성 (Thu Apr 23 2009 - 06:10:42 PDT)
- RE: [AMBER] Amber Installation problem Ross Walker (Thu Apr 23 2009 - 06:16:18 PDT)
[AMBER] NAB bug with parmbsc0 David A. Case (Thu Apr 23 2009 - 09:25:27 PDT)
Re: [AMBER] Problem with RNA hairpin unwinding in explicit water Bill Ross (Thu Apr 23 2009 - 10:53:40 PDT)
- Re: [AMBER] Problem with RNA hairpin unwinding in explicit water Sasha Buzko (Thu Apr 23 2009 - 10:55:58 PDT)
[AMBER] Unit name with loadMol2 command Nicholas Musolino (Thu Apr 23 2009 - 12:30:30 PDT)
- Re: [AMBER] Unit name with loadMol2 command David A. Case (Thu Apr 23 2009 - 15:54:02 PDT)
[AMBER] CY3 dye parameters jcmoore.student.umass.edu (Thu Apr 23 2009 - 14:42:59 PDT)
- Re: [AMBER] CY3 dye parameters FyD (Fri Apr 24 2009 - 23:04:22 PDT)
- Re: [AMBER] CY3 dye parameters Brent Krueger (Sat Apr 25 2009 - 12:33:40 PDT)
[AMBER] Amber Installation problem 주태성 (Thu Apr 23 2009 - 18:35:46 PDT)
[AMBER] Equilibrium bond lengths and angle values Dmitri Nilov (Fri Apr 24 2009 - 06:19:56 PDT)
- Re: [AMBER] Equilibrium bond lengths and angle values FyD (Fri Apr 24 2009 - 14:05:42 PDT)
  - Re: [AMBER] Equilibrium bond lengths and angle values Dmitri Nilov (Tue Apr 28 2009 - 03:56:38 PDT)
[AMBER] Simulated annealing waleed zalloum (Fri Apr 24 2009 - 07:31:36 PDT)
- Re: [AMBER] Simulated annealing Carlos Simmerling (Fri Apr 24 2009 - 07:49:40 PDT)
- Re: [AMBER] Simulated annealing waleed zalloum (Fri Apr 24 2009 - 08:04:47 PDT)
  - Re: [AMBER] Simulated annealing Carlos Simmerling (Fri Apr 24 2009 - 08:44:02 PDT)
[AMBER] restraint constant Dong Xu (Sat Apr 25 2009 - 15:15:22 PDT)
[AMBER] Papers on Amber package usage Andrew Voronkov (Sat Apr 25 2009 - 22:07:42 PDT)
- Re: [AMBER] Papers on Amber package usage David A. Case (Sun Apr 26 2009 - 05:48:31 PDT)
[AMBER] amber question Vikas Sharma (Sat Apr 25 2009 - 23:00:06 PDT)
- Re: [AMBER] amber question Barbault Florent (Sun Apr 26 2009 - 01:48:31 PDT)
  - Re: [AMBER] amber question Vikas Sharma (Sun Apr 26 2009 - 02:51:38 PDT)
  - Re: [AMBER] amber question Vikas Sharma (Sun Apr 26 2009 - 02:56:26 PDT)
[AMBER] Water-molecules sikander azam (Sun Apr 26 2009 - 06:11:33 PDT)
- Re: [AMBER] Water-molecules case (Sun Apr 26 2009 - 15:35:36 PDT)
  - [AMBER] MM-GBSA Free enegy decomposition Rajesh Raju (Mon Apr 27 2009 - 05:27:23 PDT)
[AMBER] Install 주태성 (Sun Apr 26 2009 - 06:45:45 PDT)
[AMBER] Using smd with fixed atom nandy.physics.iisc.ernet.in (Sun Apr 26 2009 - 07:57:45 PDT)
RE: [AMBER] AmberTools compiling error Ross Walker (Sun Apr 26 2009 - 18:55:06 PDT)
- Re: [AMBER] AmberTools compiling error Farly Walsh (Wed Apr 29 2009 - 12:49:27 PDT)
[AMBER] Error with calculation of the potential energy Per Jr. Greisen (Mon Apr 27 2009 - 04:03:44 PDT)
- Re: [AMBER] Error with calculation of the potential energy Carlos Simmerling (Mon Apr 27 2009 - 04:08:47 PDT)
  - Re: [AMBER] Error with calculation of the potential energy Per Jr. Greisen (Mon Apr 27 2009 - 10:11:32 PDT)
- Re: [AMBER] Error with calculation of the potential energy Robert Duke (Mon Apr 27 2009 - 11:25:14 PDT)
  - Re: [AMBER] Error with calculation of the potential energy Per Jr. Greisen (Mon Apr 27 2009 - 11:57:58 PDT)
- Re: [AMBER] Error with calculation of the potential energy Robert Duke (Mon Apr 27 2009 - 11:46:43 PDT)
- Re: [AMBER] Error with calculation of the potential energy Robert Duke (Mon Apr 27 2009 - 12:26:06 PDT)
[AMBER] Mixing of forcefields in case of covaletly bonded systems Marek Malý (Mon Apr 27 2009 - 05:06:38 PDT)
[AMBER] Polarizable force field problem: non constant total Energy, EPOLZ is increasing Tommaso Cupido (Mon Apr 27 2009 - 07:10:12 PDT)
- Re: [AMBER] Polarizable force field problem: non constant total Energy, EPOLZ is increasing David A. Case (Mon Apr 27 2009 - 10:30:55 PDT)
  - Re: [AMBER] Polarizable force field problem: non constant total Energy, EPOLZ is increasing Piotr Cieplak (Mon Apr 27 2009 - 12:07:38 PDT)
  - [AMBER] ERROR In Restraint file. Catein Catherine (Tue Apr 28 2009 - 08:12:34 PDT)
    - [AMBER] ERROR In Restraint file. Catein Catherine (Tue Apr 28 2009 - 08:27:18 PDT)
    - Re: [AMBER] ERROR In Restraint file. David A. Case (Tue Apr 28 2009 - 09:17:36 PDT)
    - RE: [AMBER] ERROR In Restraint file. Catein Catherine (Tue Apr 28 2009 - 16:32:26 PDT)
    - Re: [AMBER] ERROR In Restraint file. David A. Case (Tue Apr 28 2009 - 17:05:23 PDT)
[AMBER] pmemd compilation error john smith (Mon Apr 27 2009 - 20:30:21 PDT)
- Re: [AMBER] pmemd compilation error Robert Duke (Mon Apr 27 2009 - 21:09:15 PDT)
[AMBER] Best rms fit for correlation and covariance analysis Cihan Aydin (Mon Apr 27 2009 - 22:02:14 PDT)
[AMBER] dipole autocorrelation functions aneesh cna (Mon Apr 27 2009 - 23:23:05 PDT)
Fwd: [AMBER] MM-GBSA Free enegy decomposition Rajesh Raju (Tue Apr 28 2009 - 04:28:17 PDT)
[AMBER] transport properties oguz gurbulak (Tue Apr 28 2009 - 07:11:05 PDT)
Re: [AMBER] Best rms fit for correlation and covariance analysis Bill Ross (Tue Apr 28 2009 - 09:57:10 PDT)
[AMBER] Restraining counterions? Francesco Pietra (Tue Apr 28 2009 - 10:32:18 PDT)
Re: [AMBER] reg-TMD Carlos Simmerling (Tue Apr 28 2009 - 10:48:18 PDT)
- Re: [AMBER] reg-TMD Carlos Simmerling (Wed Apr 29 2009 - 03:28:35 PDT)
- Re: [AMBER] reg-TMD Carlos Simmerling (Wed Apr 29 2009 - 04:33:40 PDT)
Re: [AMBER] Restraining counterions? Bill Ross (Tue Apr 28 2009 - 11:59:52 PDT)
[AMBER] ANAL problems E.M. (Tue Apr 28 2009 - 13:12:04 PDT)
Re: [AMBER] ANAL problems Bill Ross (Tue Apr 28 2009 - 13:40:59 PDT)
- Re: [AMBER] ANAL problems Edward M (Tue Apr 28 2009 - 16:01:34 PDT)
[AMBER] Using AMBER force fields in NAMD Michael Zimmermann (Tue Apr 28 2009 - 14:25:56 PDT)
- RE: [AMBER] Using AMBER force fields in NAMD Ross Walker (Tue Apr 28 2009 - 15:17:06 PDT)
  - RE: [AMBER] Using AMBER force fields in NAMD Piotr Cieplak (Tue Apr 28 2009 - 15:23:15 PDT)
  - RE: [AMBER] Using AMBER force fields in NAMD Thomas Cheatham III (Tue Apr 28 2009 - 15:45:15 PDT)
[AMBER] parallel problem of QM/MM calculation for AMBER 9 liu junjun (Tue Apr 28 2009 - 14:53:06 PDT)
- RE: [AMBER] parallel problem of QM/MM calculation for AMBER 9 Ross Walker (Tue Apr 28 2009 - 15:24:12 PDT)
  - Re: [AMBER] parallel problem of QM/MM calculation for AMBER 9 liu junjun (Tue Apr 28 2009 - 19:18:31 PDT)
[AMBER] The PDB file was not recognized by Amber, what can i do? Houyang Chen (Tue Apr 28 2009 - 15:00:05 PDT)
- Re: [AMBER] The PDB file was not recognized by Amber, what can i do? Carlos Simmerling (Tue Apr 28 2009 - 15:03:57 PDT)
- Re: [AMBER] The PDB file was not recognized by Amber, what can i do? Barbault Florent (Tue Apr 28 2009 - 16:00:55 PDT)
  - RE: [AMBER] The PDB file was not recognized by Amber, what can i do? Houyang Chen (Tue Apr 28 2009 - 20:42:39 PDT)
    - RE: [AMBER] The PDB file was not recognized by Amber, what can i do? Ross Walker (Tue Apr 28 2009 - 20:56:27 PDT)
    - Re: [AMBER] The PDB file was not recognized by Amber, what can i do? Barbault Florent (Tue Apr 28 2009 - 23:56:09 PDT)
- Re: [AMBER] The PDB file was not recognized by Amber, what can i do? Markus Kaukonen (Wed Apr 29 2009 - 00:16:30 PDT)
  - RE: [AMBER] The PDB file was not recognized by Amber, what can i do? Houyang Chen (Wed Apr 29 2009 - 15:17:51 PDT)
[AMBER] Nonterminal, was not found in name map Sunita Patel (Tue Apr 28 2009 - 17:50:08 PDT)
- RE: [AMBER] Nonterminal, was not found in name map Ross Walker (Tue Apr 28 2009 - 19:49:50 PDT)
- RE: [AMBER] Nonterminal, was not found in name map Bill Ross (Tue Apr 28 2009 - 22:05:12 PDT)
[AMBER] REd program! R. A. (Tue Apr 28 2009 - 21:37:38 PDT)
- Re: [AMBER] REd program! FyD (Wed Apr 29 2009 - 06:53:12 PDT)
[AMBER] (no subject) waleed zalloum (Wed Apr 29 2009 - 05:15:12 PDT)
- Re: [AMBER] (no subject) David A. Case (Wed Apr 29 2009 - 10:56:28 PDT)
[AMBER] input error in TI calculation Hannes Wallnoefer (Wed Apr 29 2009 - 08:40:58 PDT)
- Re: [AMBER] input error in TI calculation David A. Case (Wed Apr 29 2009 - 11:48:04 PDT)
RE: [AMBER] reg-TMD Hu, Shaowen (JSC-SK)[Universities Space Research Association USRA]. (Wed Apr 29 2009 - 13:56:07 PDT)
- RE: [AMBER] reg-TMD balaji nagarajan (Wed Apr 29 2009 - 18:44:32 PDT)
[AMBER] chain restrain x TI Josmar R. da Rocha (Wed Apr 29 2009 - 15:04:52 PDT)
- Re: [AMBER] chain restrain x TI David A. Case (Thu Apr 30 2009 - 11:01:13 PDT)
[AMBER] Amber FF and Glycam Dong Xu (Wed Apr 29 2009 - 18:42:55 PDT)
- Re: [AMBER] Amber FF and Glycam Lachele Foley (Lists) (Thu Apr 30 2009 - 10:16:17 PDT)
- Re: [AMBER] Amber FF and Glycam Carlos Simmerling (Thu Apr 30 2009 - 11:36:21 PDT)
[AMBER] MM-PBSA energy decomposition Dong Xu (Wed Apr 29 2009 - 19:03:34 PDT)
- Re: [AMBER] MM-PBSA energy decomposition Hannes Kopitz (Thu Apr 30 2009 - 03:37:35 PDT)
[AMBER] hbond-error in amber9 balaji nagarajan (Wed Apr 29 2009 - 19:09:17 PDT)
- Re: [AMBER] hbond-error in amber9 Alessandro S. Nascimento (Thu Apr 30 2009 - 03:46:02 PDT)
[AMBER] Influence about HIS-HIE-HIS-HIP Rilei Yu (Wed Apr 29 2009 - 20:25:48 PDT)
- Re: [AMBER] Influence about HIS-HIE-HIS-HIP David A. Case (Thu Apr 30 2009 - 07:27:02 PDT)
[AMBER] how to add charge on metal ions bharat lakhani (Wed Apr 29 2009 - 23:44:46 PDT)
[AMBER] Request an error Collins Nganou (Thu Apr 30 2009 - 10:41:48 PDT)
[AMBER] (no subject) Collins Nganou (Thu Apr 30 2009 - 12:34:36 PDT)
- Re: [AMBER] (no subject) waleed zalloum (Wed Apr 29 2009 - 11:06:44 PDT)
- Re: [AMBER] (no subject) David A. Case (Thu Apr 30 2009 - 13:16:35 PDT)
[AMBER] Make parallel test faillure Collins Nganou (Thu Apr 30 2009 - 12:36:55 PDT)
- RE: [AMBER] Make parallel test faillure Ross Walker (Thu Apr 30 2009 - 12:48:06 PDT)

Amber Archive Apr 2009 by thread