Hello, I wanted to go ANAL ;-) to do a decomposition of the
energies in a snapshot but got this:
Max Nonbonded Pairs: 82805 packed 1 to a machine word
..
..
..
3. A T O M I C C O O R D I N A T E S
NUMBER OF ATOMS = 56897
loading the groups for analysis
----- END OF GROUP READ -----
non-bonded pairs are generated in residue base
and stored as residue pairs
Number of NB Res pairs =******** exceeds max = 82805
>>
My question is how to change the Max Nonbonded Pairs?
I found this variable is not defined in the anal directory
where is this localted?. How to change it?
Is it possible to run first ptraj to get rid of the waters
and then perhaps run anal in the ptraj output or that format is not
accomodated?
Thanks
Edu
Thanks!
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Received on Wed May 20 2009 - 13:16:06 PDT
