Dear Amber users,
I am using sander to calculate the 3D structure of a conjugate of oligopeptide and oligonucleotide. I start the calculation at 1000K. in the output file, the nucleotide bases are not planner and amino groups are distorted. My question is, how could I constrain the amino groups and the planarity of nucleotide bases?
Thank you
Waleed
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Received on Wed May 20 2009 - 13:22:44 PDT
