Thanks Carlos..
So is there any remedy?
actually 2 days ago i used ssh to for logging in to the node..the to check the output i used gedit which is not allowed in ssh...so i could not see the output..so then i used vi editor
________________________________
From: Carlos Simmerling <carlos.simmerling.gmail.com>
To: AMBER Mailing List <amber.ambermd.org>
Sent: Thursday, 23 April, 2009 5:12:02 PM
Subject: Re: [AMBER] error in output file
sounds like the simulation is running fine but your filesystem is
buffering the write to the mdout file. often the data doesn't get
flushed until the file is closed. the mdinfo file is closed at each
write, so it's got current data.
On Thu, Apr 23, 2009 at 7:39 AM, Vikas Sharma
<vs_vikassharma.yahoo.co.in> wrote:
> Dear All
>
> i am running production MD..when i checked the output file from remote host i could see 170000 steps completed...after 2 days today again i checked the output file i could see the same no. of steps being completed...then i checked the mdinfo file i could see 545000 steps completed..then i logged directly in the node and checked the output file,it again showed 170000 steps as completed and the mdinfo file showed 545000 steps as completed...when i top i could see the job still running.........
>
> please suggest a solution..
>
>
>
> Now surf faster and smarter ! Check out the new Firefox 3 - Yahoo! Edition http://downloads.yahoo.com/in/firefox/
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Now surf faster and smarter ! Check out the new Firefox 3 - Yahoo! Edition http://downloads.yahoo.com/in/firefox/
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed May 20 2009 - 12:22:10 PDT
