Hi,
You can process your trajectory with ptraj to output every 5th frame in a
new trajectory and then load it in vmd.
trajin name.crd 1 5000 5
trajout new.crd
Every 5th frame will be written in new.crd.
Bala
On Fri, Apr 3, 2009 at 3:16 AM, Mannan <malie_03.yahoo.co.in> wrote:
> I have a trajectory of 5ns with frames from each pico seconds and water
> molecues around the protein 8A. When I load in VMD my system could not
> handel its memory.
> I would like to delete the frmes with 5ps interval using ptraj.
>
> I could not do that. Please help me out.
> Thanks in advance
> Thomas
>
> --- On Thu, 2/4/09, David A. Case <case.biomaps.rutgers.edu> wrote:
>
>
> From: David A. Case <case.biomaps.rutgers.edu>
> Subject: Re: [AMBER] please help me out
> To: "AMBER Mailing List" <amber.ambermd.org>
> Date: Thursday, 2 April, 2009, 11:18 PM
>
>
> On Thu, Apr 02, 2009, bharat lakhani wrote:
>
> > here i am sending my drug file.i want to do minimization.Could anyone
> please
> > let me know.what would be the *minvac.in file for this antibiotic.*
>
> Sounds like you should follow Tutorial B4, at
> http://ambermd.org/tutorials.
>
> ...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
> Add more friends to your messenger and enjoy! Go to
> http://messenger.yahoo.com/invite/
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Apr 05 2009 - 01:07:29 PDT
