I have a trajectory of 5ns with frames from each pico seconds and water molecues around the protein 8A. When I load in VMD my system could not handel its memory.
I would like to delete the frmes with 5ps interval using ptraj.
I could not do that. Please help me out.
Thanks in advance
Thomas
--- On Thu, 2/4/09, David A. Case <case.biomaps.rutgers.edu> wrote:
From: David A. Case <case.biomaps.rutgers.edu>
Subject: Re: [AMBER] please help me out
To: "AMBER Mailing List" <amber.ambermd.org>
Date: Thursday, 2 April, 2009, 11:18 PM
On Thu, Apr 02, 2009, bharat lakhani wrote:
> here i am sending my drug file.i want to do minimization.Could anyone please
> let me know.what would be the *minvac.in file for this antibiotic.*
Sounds like you should follow Tutorial B4, at
http://ambermd.org/tutorials.
...dac
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Received on Fri Apr 03 2009 - 01:18:11 PDT
