[AMBER] Water-molecules

From: sikander azam <syedazam2008.gmail.com>
Date: Sun, 26 Apr 2009 14:11:33 +0100

Hallo!!!

I m working to simulate water molecules and successfully minimized the
system along with heating. While running simulation I came across the
following

Frac coord min, max: -8.093157865439766E-006 0.774239522699007
 The system has extended beyond
     the extent of the virtual box.
 Restarting sander will recalculate
    a new virtual box with 30 Angstroms
    extra on each side, if there is a
    restart file for this configuration.
 SANDER BOMB in subroutine Routine: map_coords (ew_force.f)
 Atom out of bounds. If a restart has been written,
 restarting should resolve the error


Looking forward for an assistance
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Received on Wed May 20 2009 - 12:54:46 PDT
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