Hi all!!
I'm still stuck with the same problem! I am just trying to run the amoeba test and I can't run sander.
I don't understand where does the file 'inpcrd' that is on $AMBERHOME/amber10/test/sleap/amoeba come from!
After passing the Run.amoeba test this is the error that I get when I try to run sander:
The command that I am using is the following:
$AMBERHOME/exe/sander.MPI -O -i mdin -o jac.out -c jac.xyz -p jac_2.prmtop -r jac.rst -x jac.mdcr
bash: mc: line 1: syntax error: unexpected end of file
-bash: error importing function definition for `mc'
[node11:18813] MPI_ABORT invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 1
bash: mc: line 1: syntax error: unexpected end of file
-bash: error importing function definition for `mc'
[node11:18813] MPI_ABORT invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 1
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
libpthread.so.0 00002AD2F7C53C00 Unknown Unknown Unknown
libopen-pal.so.0 00002AD2F720194C Unknown Unknown Unknown
libmpi.so.0 00002AD2F6D99784 Unknown Unknown Unknown
libmpi.so.0 00002AD2F6DF9ED5 Unknown Unknown Unknown
libmpi.so.0 00002AD2F6DFAABB Unknown Unknown Unknown
libmpi.so.0 00002AD2F6DF46CA Unknown Unknown Unknown
libmpi.so.0 00002AD2F6DAE4AA Unknown Unknown Unknown
libmpi_f77.so.0 00002AD2F6C31BC4 Unknown Unknown Unknown
sander.MPI 00000000004F1863 Unknown Unknown Unknown
sander.MPI 00000000004EEAC6 Unknown Unknown Unknown
sander.MPI 000000000043FE22 Unknown Unknown Unknown
libc.so.6 00002AD2F7D7C184 Unknown Unknown Unknown
sander.MPI 000000000043FD69 Unknown Unknown Unknown
Image PC Routine Line Source
libpthread.so.0 00002AD2F7C53C00 Unknown Unknown Unknown
libopen-pal.so.0 00002AD2F720194C Unknown Unknown Unknown
libmpi.so.0 00002AD2F6D99784 Unknown Unknown Unknown
libmpi.so.0 00002AD2F6DF9ED5 Unknown Unknown Unknown
libmpi.so.0 00002AD2F6DFAABB Unknown Unknown Unknown
libmpi.so.0 00002AD2F6DF46CA Unknown Unknown Unknown
libmpi.so.0 00002AD2F6DAE4AA Unknown Unknown Unknown
libmpi_f77.so.0 00002AD2F6C31BC4 Unknown Unknown Unknown
sander.MPI 00000000004F1863 Unknown Unknown Unknown
sander.MPI 00000000004EEAC6 Unknown Unknown Unknown
sander.MPI 000000000043FE22 Unknown Unknown Unknown
libc.so.6 00002AD2F7D7C184 Unknown Unknown Unknown
sander.MPI 000000000043FD69 Unknown Unknown Unknown
Does anyone can help me please?
Thank you,
Susana
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Received on Wed May 20 2009 - 13:25:04 PDT
