On Mon, Apr 6, 2009 at 10:21 PM, Atro Tossavainen
<atro.tossavainen+amber.helsinki.fi> wrote:
>> Do you mean that the flag -openmpi in ./configure (which was ok for
>> openmpi 1.2.6) is no good for version 1.3.1, as I used now?
>
> I wouldn't even dare guess. The only places in the entire AMBER source
> tree in which I see any mentions of OpenMPI are in the configure_amber
> script and they're not very specific.
./configure_amber --help
Parallel option flags
-openmpi Use OpenMPI (MPI_HOME must be set)
in .bashrc:
MPI_HOME=/usr/local/
export MPI_HOME
>
>> As far as the installation of openmpi 1.3.1 is concerned, the tests passed:
>>
>> ompi_info | grep libnuma
>> MCA affinity: libnuma (MCA v 2.0, API 2.0)
>>
>> ompi_info | grep maffinity
>> MCA affinity: first use (MCA as above)
>> MCA affinity: libnuma as above.
>
> That's not interesting.
I was instructed it is important for dual-opteron. Wrong?
Can you run an actual MPI program (other than
> AMBER)?
Yes, all tests in the "examples" passed
thanks
francesco
>
> --
> Atro Tossavainen (Mr.) / The Institute of Biotechnology at
> Systems Analyst, Techno-Amish & / the University of Helsinki, Finland,
> +358-9-19158939 UNIX Dinosaur / employs me, but my opinions are my own.
> < URL : http : / / www . helsinki . fi / %7E atossava / > NO FILE ATTACHMENTS
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Received on Wed Apr 08 2009 - 01:22:28 PDT
