Hi Ross:
A "/" is missing from CXX, can't say if it was missing when issuing
the ./configure.
To shorten, I have copied to the new installation of amd64 lenny all
previous /usr/local/bin executables, which comprise openmpi-1.2.6, and
verified that previous installation of amber 9 pass all serial and
parallel tests. But probably it was not fully patched and, anyway, it
is curious and defeating that I am now unable to compile it from
scratch. I have now posted in answer to Professor Case observation
about yacc parser.
thanks
francesco
On Thu, Apr 2, 2009 at 5:45 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
> Hi Francesco,
>
>> CC=/opt/intel/cce/10.1.015/bin/icc CXX=opt/intel/cce/10.1.015/bin/icpc
>> F77=/opt/intel/fce/10.1.015/bin/ifort
>> FC=/opt/intel/fce/10.1.015/bin/ifort --with-libnuma=/usr/lib
>>
>> cheching if C++ compiler works .. NO
>>
>> it is not clear to me to which compiler NO refers: gcc or intel?
>
> This is telling you that the command you selected for icpc does not compile c++ code. So this is referring to the Intel compiler. It is not clear why it doesn't work. There should be a log file somewhere with more details. However, AMBER only needs the fortran compiler to match with the MPI build so I would suggest just setting F77=ifort FC=ifort and then leaving everything else at the defaults. This way it will use gcc and g++ for the c and C++ builds respectively.
>
> Good luck,
> Ross
>
>
> /\
> \/
> |\oss Walker
>
> | Assistant Research Professor |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on request |
>
> Note: Electronic Mail is not secure, has no guarantee of delivery, may not be read every day, and should not be used for urgent or sensitive issues.
>
>
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Apr 03 2009 - 01:15:33 PDT
