Amber Archive Feb 2018 by subject
311 messages
:
Starting
Wed Jan 31 2018 - 15:30:02 PST,
Ending
Wed Feb 28 2018 - 21:00:03 PST
sort by
: [
thread
] [
author
] [
date
] [ subject ] [
attachment
]
[AMBER] "Issue" with hbond
Núbia Prates
(Tue Feb 20 2018 - 10:00:51 PST)
Daniel Roe
(Tue Feb 20 2018 - 09:18:31 PST)
Núbia Prates
(Fri Feb 16 2018 - 13:57:29 PST)
[AMBER] "refc" file
Armin Hodaei
(Tue Feb 27 2018 - 05:43:39 PST)
David A Case
(Tue Feb 27 2018 - 04:36:47 PST)
Armin Hodaei
(Tue Feb 27 2018 - 02:45:29 PST)
[AMBER] "The unperturbed charge of the unit is not integral": really nothing to care about?
David A Case
(Wed Feb 21 2018 - 04:48:24 PST)
Nikolay N. Kuzmich
(Wed Feb 21 2018 - 01:23:13 PST)
David A Case
(Mon Feb 19 2018 - 18:22:01 PST)
Nikolay N. Kuzmich
(Mon Feb 19 2018 - 01:09:32 PST)
[AMBER] 3 GPUs and replica exchange MD
Cruzeiro,Vinicius Wilian D
(Fri Feb 16 2018 - 16:49:46 PST)
James Kress
(Fri Feb 16 2018 - 10:27:51 PST)
Cruzeiro,Vinicius Wilian D
(Fri Feb 16 2018 - 03:37:33 PST)
Nikolay N. Kuzmich
(Fri Feb 16 2018 - 01:27:01 PST)
[AMBER] 3D-RISM calculation at pH 3.0
Rakesh Srivastava
(Mon Feb 19 2018 - 19:59:13 PST)
Tyler Luchko (Lists)
(Mon Feb 19 2018 - 14:58:23 PST)
Rakesh Srivastava
(Sun Feb 18 2018 - 21:55:12 PST)
[AMBER] ABMD write error to MDOUT
Feng Pan
(Wed Feb 28 2018 - 20:45:24 PST)
[AMBER] add vertical lines for initial and final angle
Daniel Roe
(Tue Feb 20 2018 - 09:13:02 PST)
Rosellen, Martin
(Mon Feb 19 2018 - 04:41:27 PST)
[AMBER] Adding a new atom type - ATTN, no polarizability parameter
Henrik Hariman
(Tue Feb 27 2018 - 12:21:59 PST)
[AMBER] Adding divalent ions in LEaP
Nikolay N. Kuzmich
(Thu Feb 15 2018 - 06:45:24 PST)
David A Case
(Fri Feb 09 2018 - 04:46:51 PST)
Hector A. Baldoni
(Fri Feb 09 2018 - 04:28:58 PST)
Nikolay N. Kuzmich
(Fri Feb 09 2018 - 03:04:02 PST)
David A Case
(Thu Feb 08 2018 - 12:36:43 PST)
Christina Bergonzo
(Thu Feb 08 2018 - 06:42:41 PST)
Nikolay N. Kuzmich
(Thu Feb 08 2018 - 06:19:36 PST)
[AMBER] adding ions
Krystyna Zakrzewska
(Tue Feb 06 2018 - 07:33:14 PST)
Daniel Roe
(Tue Feb 06 2018 - 06:37:06 PST)
Krystyna Zakrzewska
(Mon Feb 05 2018 - 06:46:54 PST)
David A Case
(Mon Feb 05 2018 - 06:08:23 PST)
Krystyna Zakrzewska
(Mon Feb 05 2018 - 02:15:38 PST)
[AMBER] amb2gmx
Roja
(Mon Feb 05 2018 - 08:51:39 PST)
Jason Swails
(Mon Feb 05 2018 - 07:54:07 PST)
roja rahmani
(Mon Feb 05 2018 - 07:34:31 PST)
roja rahmani
(Mon Feb 05 2018 - 06:58:54 PST)
Jason Swails
(Mon Feb 05 2018 - 06:23:22 PST)
roja rahmani
(Mon Feb 05 2018 - 06:14:52 PST)
Jason Swails
(Mon Feb 05 2018 - 06:10:16 PST)
Soumendranath Bhakat
(Mon Feb 05 2018 - 06:01:58 PST)
Roja
(Mon Feb 05 2018 - 05:55:24 PST)
Jason Swails
(Sat Feb 03 2018 - 21:55:18 PST)
roja rahmani
(Fri Feb 02 2018 - 23:15:46 PST)
[AMBER] amber coordinates in VMD
Stefano Guglielmo
(Mon Feb 26 2018 - 17:06:41 PST)
Carlos Simmerling
(Thu Feb 22 2018 - 06:42:23 PST)
pancham lal Gupta
(Thu Feb 22 2018 - 06:30:28 PST)
Stefano Guglielmo
(Wed Feb 21 2018 - 16:17:54 PST)
[AMBER] AMBER disk usage on CPU or GPU nodes
Lenz, Stefan
(Wed Feb 14 2018 - 08:11:06 PST)
Ross Walker
(Wed Feb 14 2018 - 06:58:43 PST)
Lenz, Stefan
(Tue Feb 13 2018 - 09:27:53 PST)
[AMBER] AMBER on AWS - Beta testers wanted.
Mike Mazanetz
(Thu Feb 08 2018 - 17:10:36 PST)
[AMBER] amber workshop reminder
Fabian Glaser
(Mon Feb 05 2018 - 02:02:59 PST)
[AMBER] AMBER/ORCA for QM/MM
MinYuan
(Wed Feb 28 2018 - 04:26:38 PST)
Goetz, Andreas
(Mon Feb 26 2018 - 17:56:12 PST)
minyuan.mail.ustc.edu.cn
(Mon Feb 26 2018 - 17:13:21 PST)
Goetz, Andreas
(Mon Feb 26 2018 - 13:04:01 PST)
minyuan.mail.ustc.edu.cn
(Mon Feb 26 2018 - 06:24:29 PST)
[AMBER] AMBER16 and intel 2017, possible to compile?
Patrice Peterson
(Thu Feb 01 2018 - 04:51:26 PST)
David A Case
(Thu Feb 01 2018 - 04:24:40 PST)
[AMBER] Amber16 pmemd.cuda on Tesla M2075
Richard Smith
(Fri Feb 16 2018 - 08:46:59 PST)
[AMBER] Amber16/AmberTools17 CUDA version
Baker D.J.
(Wed Feb 21 2018 - 12:53:42 PST)
Baker D.J.
(Wed Feb 21 2018 - 08:28:09 PST)
[AMBER] B-factor Values
Daniel Roe
(Fri Feb 09 2018 - 05:50:18 PST)
Mac Kevin Braza
(Thu Feb 08 2018 - 23:12:34 PST)
[AMBER] BASIC information for AMBER
Leena Aggarwal
(Thu Feb 01 2018 - 21:09:50 PST)
Vikram Dalal
(Thu Feb 01 2018 - 10:35:13 PST)
[AMBER] by MM-PBSA binding energy at 310K?
Michael Shokhen
(Thu Feb 01 2018 - 00:00:16 PST)
[AMBER] Can I include Mg ions in receptor mask when using MMPBSA.py
Jie Zhu
(Tue Feb 27 2018 - 14:19:04 PST)
[AMBER] Certain statistics from the trajectory
Nikolay N. Kuzmich
(Mon Feb 12 2018 - 01:10:47 PST)
Daniel Roe
(Fri Feb 09 2018 - 05:40:49 PST)
Nikolay N. Kuzmich
(Wed Feb 07 2018 - 03:54:56 PST)
[AMBER] Combining coordinate files + Renumbering residues
Jag Silwal
(Wed Feb 21 2018 - 12:07:05 PST)
[AMBER] Compressing trajectory file
Daniel Roe
(Thu Feb 01 2018 - 06:10:06 PST)
[AMBER] Constant Redox potential MD simulations
Roitberg,Adrian E
(Tue Feb 06 2018 - 16:43:35 PST)
Tarsis
(Tue Feb 06 2018 - 16:19:00 PST)
[AMBER] Coordinate resetting (SHAKE) cannot be accomplished, deviation is too large NITTER, NIT, LL and J are 0 1 151
David A Case
(Fri Feb 23 2018 - 05:18:05 PST)
KRIPI TOMAR
(Thu Feb 22 2018 - 23:24:35 PST)
[AMBER] CPPTRAJ ERROR-Reg.
Daniel Roe
(Thu Feb 01 2018 - 05:50:28 PST)
Manjula Saravanan
(Thu Feb 01 2018 - 02:26:52 PST)
[AMBER] CPPTRAJ HBond analysis Segmentation fault (core dumped)
Daniel Roe
(Thu Feb 01 2018 - 05:58:10 PST)
[AMBER] CPPTRAJ: How to project trajectories of one simulation onto principal components (PCs) of another simulation?
Daniel Roe
(Thu Feb 01 2018 - 06:20:05 PST)
[AMBER] Dendrogram from cpptraj clustering?
Gustavo Seabra
(Fri Feb 16 2018 - 05:15:07 PST)
George M. Giambasu
(Thu Feb 15 2018 - 16:37:45 PST)
Gustavo Seabra
(Thu Feb 15 2018 - 06:51:00 PST)
[AMBER] distance restrain for group of residues
Armin Hodaei
(Mon Feb 26 2018 - 02:01:08 PST)
David A Case
(Thu Feb 01 2018 - 10:17:05 PST)
ARMIN HODAEI
(Thu Feb 01 2018 - 04:39:22 PST)
David A Case
(Thu Feb 01 2018 - 04:31:00 PST)
ARMIN HODAEI
(Wed Jan 31 2018 - 15:19:56 PST)
[AMBER] eChemInfo 2018 workshop on drug design in Milano
Thomas Exner
(Sat Feb 17 2018 - 02:51:15 PST)
[AMBER] Enquiry on ntt
Ming Tang
(Fri Feb 23 2018 - 19:28:40 PST)
David A Case
(Fri Feb 23 2018 - 18:56:35 PST)
Chris Neale
(Fri Feb 23 2018 - 15:00:25 PST)
Ming Tang
(Fri Feb 23 2018 - 14:50:13 PST)
Ming Tang
(Thu Feb 22 2018 - 14:40:41 PST)
Tom Kurtzman
(Thu Feb 22 2018 - 04:52:11 PST)
Ming Tang
(Thu Feb 22 2018 - 03:22:08 PST)
[AMBER] EULA/NVIDIA
Ross Walker
(Fri Feb 09 2018 - 04:50:35 PST)
Chris Neale
(Wed Feb 07 2018 - 19:27:40 PST)
Adrian Roitberg
(Mon Feb 05 2018 - 14:31:20 PST)
[AMBER] Extract Velocity (and Force) from Gromacs .trr trajectory using cpptraj
Daniel Roe
(Thu Feb 01 2018 - 06:03:48 PST)
[AMBER] Extracting lowest energy snapshot from trajectory
Daniel Roe
(Fri Feb 09 2018 - 04:27:38 PST)
MOHD HOMAIDUR RAHMAN
(Mon Feb 05 2018 - 08:28:04 PST)
[AMBER] ff15ipq and divalent ions
David Cerutti
(Mon Feb 12 2018 - 23:04:59 PST)
Neha Gandhi
(Mon Feb 12 2018 - 22:05:15 PST)
[AMBER] Forcefield for methylated and acetylated amino acids
Junmei Wang
(Thu Feb 08 2018 - 08:12:20 PST)
Shahryar Alavi
(Thu Feb 08 2018 - 07:55:27 PST)
[AMBER] Fwd: B-factor Values
Mac Kevin Braza
(Thu Feb 08 2018 - 23:13:44 PST)
[AMBER] gist analysis
Steven Ramsey
(Tue Feb 06 2018 - 17:47:52 PST)
Sofia Vasilakaki
(Tue Feb 06 2018 - 16:14:58 PST)
[AMBER] Has anyone determined a fix for QM_CHECK_PERIODIC or inability to include solvent in qmmask error
Goetz, Andreas
(Tue Feb 27 2018 - 23:59:18 PST)
James Kress
(Tue Feb 27 2018 - 19:26:53 PST)
David A Case
(Tue Feb 27 2018 - 17:50:13 PST)
Gustavo Seabra
(Tue Feb 27 2018 - 12:13:51 PST)
James Kress
(Tue Feb 27 2018 - 12:02:30 PST)
[AMBER] hbond analysis on DNA-protein complex
Daniel Roe
(Thu Feb 01 2018 - 06:05:41 PST)
[AMBER] How to generate parameters for two MG 2+ ions ---GTP
David A Case
(Mon Feb 26 2018 - 14:55:31 PST)
Rana Rehan Khalid
(Mon Feb 26 2018 - 08:02:02 PST)
[AMBER] how to run/install leap
David A Case
(Tue Feb 06 2018 - 10:59:23 PST)
Mike Mazanetz
(Tue Feb 06 2018 - 10:00:22 PST)
Mike Mazanetz
(Tue Feb 06 2018 - 08:39:54 PST)
[AMBER] how to run/install leap - help needed
Mike Mazanetz
(Tue Feb 06 2018 - 11:04:12 PST)
[AMBER] how to run/install leap - solved
Mike Mazanetz
(Tue Feb 06 2018 - 12:04:30 PST)
[AMBER] Information required about the potential of Amber software.
David A Case
(Mon Feb 12 2018 - 04:57:41 PST)
Ubaid Ullah
(Fri Feb 09 2018 - 20:10:56 PST)
[AMBER] Interface with DFTB+
Holger Kruse
(Tue Feb 27 2018 - 06:11:53 PST)
Raimon Fabregat
(Tue Feb 27 2018 - 02:26:55 PST)
[AMBER] Ion dissociation computed by umbrella sampling
David A Case
(Mon Feb 12 2018 - 04:30:17 PST)
Veronika Jurásková
(Thu Feb 08 2018 - 02:21:52 PST)
[AMBER] is that possible to change the size of the box in one direction in simulation?
Parviz Seifpanahi Shabane
(Thu Feb 01 2018 - 08:55:23 PST)
[AMBER] Is there a bug in how Amber16 handles qmmask and WAT?
James Kress
(Tue Feb 27 2018 - 19:06:03 PST)
Goetz, Andreas
(Tue Feb 27 2018 - 17:43:23 PST)
David A Case
(Tue Feb 27 2018 - 17:33:59 PST)
James Kress
(Tue Feb 27 2018 - 12:01:37 PST)
Carlos Simmerling
(Tue Feb 27 2018 - 10:54:33 PST)
James Kress
(Tue Feb 27 2018 - 10:48:51 PST)
James Kress
(Sun Feb 25 2018 - 12:55:27 PST)
Chris Neale
(Sun Feb 25 2018 - 11:05:54 PST)
James Kress
(Sun Feb 25 2018 - 11:03:06 PST)
James Kress
(Thu Feb 22 2018 - 14:10:31 PST)
Daniel Roe
(Thu Feb 22 2018 - 12:19:59 PST)
James Kress
(Thu Feb 22 2018 - 11:58:54 PST)
James Kress
(Wed Feb 21 2018 - 13:25:25 PST)
[AMBER] Jobs and Evens in CHARMM-GUI
Jumin Lee
(Mon Feb 05 2018 - 14:00:04 PST)
[AMBER] leap (UNKNOWN ATOM TYPE: O3)
Ruth Helena Tichauer
(Wed Feb 28 2018 - 11:18:45 PST)
Kellon Belfon
(Wed Feb 28 2018 - 09:59:52 PST)
Ruth Helena Tichauer
(Wed Feb 28 2018 - 05:01:08 PST)
Markowska
(Wed Feb 28 2018 - 04:55:15 PST)
Ruth Helena Tichauer
(Wed Feb 28 2018 - 04:46:59 PST)
[AMBER] lipidorder in cpptraj
Daniel Roe
(Fri Feb 09 2018 - 12:48:03 PST)
Chitrak Gupta
(Fri Feb 09 2018 - 11:27:17 PST)
Daniel Roe
(Thu Feb 08 2018 - 03:55:16 PST)
Chitrak Gupta
(Wed Feb 07 2018 - 16:13:59 PST)
[AMBER] Make install Error
Elisa Pieri
(Tue Feb 13 2018 - 06:57:28 PST)
Elisa Pieri
(Tue Feb 13 2018 - 06:03:00 PST)
Hai Nguyen
(Tue Feb 13 2018 - 05:27:41 PST)
Hai Nguyen
(Tue Feb 13 2018 - 05:22:57 PST)
Elisa Pieri
(Tue Feb 13 2018 - 05:11:03 PST)
Hai Nguyen
(Tue Feb 13 2018 - 04:30:55 PST)
Elisa Pieri
(Tue Feb 13 2018 - 01:46:05 PST)
[AMBER] Mask building problems
James Kress
(Tue Feb 20 2018 - 16:14:44 PST)
[AMBER] MD simulation of a protein at pH 3.0
Rakesh Srivastava
(Fri Feb 16 2018 - 20:46:16 PST)
Cruzeiro,Vinicius Wilian D
(Fri Feb 16 2018 - 06:01:48 PST)
Rakesh Srivastava
(Fri Feb 16 2018 - 04:15:48 PST)
[AMBER] MPI error in running a multi-sander job for TI calculation
David A Case
(Sun Feb 11 2018 - 05:30:12 PST)
Ahsan Mohd
(Sat Feb 10 2018 - 11:27:42 PST)
[AMBER] OL15 (leaprc.DNA.OL15) vs bsc1 (leaprc.DNA.bsc1).
Saikat Pal
(Tue Feb 20 2018 - 09:23:52 PST)
Vlad Cojocaru
(Tue Feb 20 2018 - 05:33:35 PST)
Saikat Pal
(Tue Feb 20 2018 - 04:41:06 PST)
[AMBER] Paramfit WRITE_ENERGY
CA gmail
(Wed Feb 07 2018 - 05:35:25 PST)
[AMBER] PatchingError: No changes made from this patch
Elisa Pieri
(Tue Feb 13 2018 - 06:32:19 PST)
Daniel Roe
(Tue Feb 13 2018 - 05:46:01 PST)
Elisa Pieri
(Tue Feb 13 2018 - 01:27:26 PST)
[AMBER] path_mode variable in SMD
Feng Pan
(Sat Feb 03 2018 - 16:52:15 PST)
David Sáez
(Fri Feb 02 2018 - 06:29:46 PST)
[AMBER] PB Bomb in pb_aaradi(): No radius assigned for atom 7 CB 3C
Ray Luo
(Sun Feb 11 2018 - 17:40:18 PST)
Morrow,John Kenneth
(Sun Feb 11 2018 - 14:08:57 PST)
[AMBER] PCA scree plots
Daniel Roe
(Thu Feb 01 2018 - 06:26:10 PST)
[AMBER] Ph.D. and Post-doc positions in molecular simulations and structural bioinformatics
Jan Brezovsky
(Thu Feb 08 2018 - 05:16:42 PST)
[AMBER] Placing ions within a maximum distance from the solute
David A Case
(Mon Feb 26 2018 - 04:47:18 PST)
Nikolay N. Kuzmich
(Mon Feb 26 2018 - 00:14:24 PST)
[AMBER] printcharges not working when imin=5 and maxcyc=0
David Sáez
(Thu Feb 01 2018 - 05:48:36 PST)
[AMBER] Problem calculating energies using cpptraj and sander API
Lee-Ping Wang
(Mon Feb 12 2018 - 19:40:36 PST)
Jason Swails
(Mon Feb 12 2018 - 19:31:23 PST)
Lee-Ping Wang
(Mon Feb 12 2018 - 14:16:27 PST)
[AMBER] Problem in installing Amber16
Tasneem Kausar
(Fri Feb 09 2018 - 02:18:41 PST)
Daniel Roe
(Thu Feb 08 2018 - 04:03:36 PST)
Tasneem Kausar
(Wed Feb 07 2018 - 19:42:18 PST)
Elvis Martis
(Wed Feb 07 2018 - 19:26:33 PST)
Tasneem Kausar
(Wed Feb 07 2018 - 19:14:29 PST)
Tasneem Kausar
(Wed Feb 07 2018 - 00:43:25 PST)
[AMBER] Problem with Atomtype of ligand in protein-ligand complex
David A Case
(Tue Feb 13 2018 - 09:40:19 PST)
Sivasudhan R
(Tue Feb 13 2018 - 06:43:52 PST)
Daniel Roe
(Tue Feb 13 2018 - 05:47:23 PST)
Sivasudhan R
(Mon Feb 12 2018 - 23:22:33 PST)
[AMBER] Problem with parallel install
David A Case
(Mon Feb 26 2018 - 18:30:05 PST)
Kevin Keane
(Mon Feb 26 2018 - 17:04:20 PST)
Maria Clelia Milletti
(Mon Feb 26 2018 - 14:04:25 PST)
[AMBER] Problem with using Monte Carlo Barostat algorithm in pmemd cuda
David Cerutti
(Sun Feb 18 2018 - 21:25:16 PST)
Roma Mukhopadhyay
(Sun Feb 18 2018 - 20:31:40 PST)
David Cerutti
(Sun Feb 18 2018 - 17:48:36 PST)
David A Case
(Sun Feb 18 2018 - 17:22:16 PST)
Roma Mukhopadhyay
(Sat Feb 17 2018 - 08:53:55 PST)
Andreas Tosstorff
(Sat Feb 17 2018 - 00:09:17 PST)
Roma Mukhopadhyay
(Fri Feb 16 2018 - 20:07:06 PST)
[AMBER] Quasi-harmonic analysis
Chetna Tyagi
(Fri Feb 09 2018 - 07:12:39 PST)
Daniel Roe
(Fri Feb 09 2018 - 04:35:09 PST)
Chetna Tyagi
(Tue Feb 06 2018 - 06:50:52 PST)
[AMBER] Query on thermodynamic integration of complexes involving metal ions
muthu kumaran
(Thu Feb 01 2018 - 20:32:53 PST)
David A Case
(Thu Feb 01 2018 - 04:25:28 PST)
muthu kumaran
(Wed Jan 31 2018 - 21:33:20 PST)
[AMBER] Question about how to compute kinetic energy from velocity trajectory
Lee-Ping Wang
(Tue Feb 20 2018 - 15:38:46 PST)
Daniel Roe
(Tue Feb 20 2018 - 12:36:38 PST)
Lee-Ping Wang
(Mon Feb 12 2018 - 12:04:21 PST)
[AMBER] Question about proper usage of pysander
Jason Swails
(Tue Feb 13 2018 - 13:05:30 PST)
Lee-Ping Wang
(Tue Feb 13 2018 - 10:49:54 PST)
Lee-Ping Wang
(Tue Feb 13 2018 - 10:47:13 PST)
David A Case
(Tue Feb 13 2018 - 09:53:54 PST)
Hai Nguyen
(Tue Feb 13 2018 - 09:34:07 PST)
Hai Nguyen
(Tue Feb 13 2018 - 09:32:59 PST)
Lee-Ping Wang
(Tue Feb 13 2018 - 07:31:06 PST)
[AMBER] Question about using cpptraj - Script
Gustavo Seabra
(Wed Feb 28 2018 - 12:59:51 PST)
Marcelo Andrade Chagas
(Wed Feb 28 2018 - 11:28:02 PST)
[AMBER] RDF
Gustavo Seabra
(Fri Feb 23 2018 - 11:13:46 PST)
Marcelo Andrade Chagas
(Fri Feb 23 2018 - 10:39:06 PST)
[AMBER] Regarding error in frcmod file
David A Case
(Tue Feb 13 2018 - 09:34:11 PST)
Aashish Bhatt
(Tue Feb 13 2018 - 07:30:23 PST)
Aashish Bhatt
(Mon Feb 12 2018 - 05:46:53 PST)
[AMBER] Regarding termination of pmemd.cuda
Rajarshi Roy
(Thu Feb 08 2018 - 00:41:25 PST)
[AMBER] Regarding vdW (or other) parameters for type: Pb
Pengfei Li
(Thu Feb 01 2018 - 08:27:59 PST)
Lorenzo Gontrani
(Thu Feb 01 2018 - 02:19:42 PST)
Garima Singh
(Thu Feb 01 2018 - 02:03:48 PST)
[AMBER] Reorienting the protein during simulation
Daniel Roe
(Thu Feb 01 2018 - 05:59:19 PST)
[AMBER] RMSD with cpptraj
Rui, Huan
(Fri Feb 09 2018 - 13:54:37 PST)
Daniel Roe
(Fri Feb 09 2018 - 13:36:20 PST)
Rui, Huan
(Fri Feb 09 2018 - 13:29:17 PST)
Rui, Huan
(Fri Feb 09 2018 - 11:50:37 PST)
Rui, Huan
(Fri Feb 09 2018 - 11:46:21 PST)
Carlos Simmerling
(Fri Feb 09 2018 - 11:40:48 PST)
Rui, Huan
(Fri Feb 09 2018 - 11:38:32 PST)
[AMBER] sander API does not support EP with igb 6
David Cerutti
(Fri Feb 16 2018 - 07:01:08 PST)
Lee-Ping Wang
(Fri Feb 16 2018 - 05:44:16 PST)
[AMBER] Scaling QM energy/forces
Goetz, Andreas
(Tue Feb 20 2018 - 12:29:34 PST)
Raimon Fabregat
(Mon Feb 19 2018 - 06:50:16 PST)
[AMBER] selection of the type of box in molecular dynamics in AMBER
David A Case
(Fri Feb 23 2018 - 05:14:54 PST)
Vikram Dalal
(Thu Feb 22 2018 - 13:22:38 PST)
[AMBER] setbox for octahedral
Daniel Roe
(Fri Feb 09 2018 - 04:21:42 PST)
David A Case
(Sun Feb 04 2018 - 05:29:15 PST)
accuratefreeenergy.gmail.com
(Fri Feb 02 2018 - 14:08:53 PST)
Andrew Schaub
(Fri Feb 02 2018 - 10:07:57 PST)
[AMBER] Simulation does not restart from restart file written in previous step.
Abhilash J
(Sat Feb 24 2018 - 05:52:52 PST)
David A Case
(Fri Feb 23 2018 - 10:29:25 PST)
Abhilash J
(Fri Feb 23 2018 - 04:49:29 PST)
[AMBER] SMD using Orca for QM region unknown atom specifier
Ruth Helena Tichauer
(Mon Feb 12 2018 - 06:10:51 PST)
Ruth Helena Tichauer
(Mon Feb 12 2018 - 05:57:23 PST)
David A Case
(Mon Feb 12 2018 - 04:44:22 PST)
Ruth Helena Tichauer
(Fri Feb 09 2018 - 02:03:57 PST)
Goetz, Andreas
(Thu Feb 08 2018 - 13:52:56 PST)
Ruth Helena Tichauer
(Thu Feb 08 2018 - 12:37:28 PST)
[AMBER] solvatebox iso error
Daniel Roe
(Fri Feb 09 2018 - 08:38:40 PST)
Ahmed Mashaly
(Fri Feb 09 2018 - 08:23:48 PST)
Daniel Roe
(Fri Feb 09 2018 - 08:10:46 PST)
Daniel Roe
(Fri Feb 09 2018 - 06:02:16 PST)
Ahmed Mashaly
(Thu Feb 08 2018 - 08:32:58 PST)
Ahmed Mashaly
(Thu Feb 08 2018 - 05:16:17 PST)
Daniel Roe
(Thu Feb 08 2018 - 04:14:37 PST)
Ahmed Mashaly
(Wed Feb 07 2018 - 10:10:21 PST)
[AMBER] some programs do not appear
David A Case
(Tue Feb 13 2018 - 07:13:09 PST)
Hai Nguyen
(Mon Feb 12 2018 - 14:55:23 PST)
Ibrahim Said
(Mon Feb 12 2018 - 14:50:09 PST)
[AMBER] Strong Na+-ASP interactions
Rui, Huan
(Mon Feb 12 2018 - 06:33:29 PST)
David A Case
(Mon Feb 12 2018 - 04:50:46 PST)
Rui, Huan
(Fri Feb 09 2018 - 08:39:06 PST)
Carlos Simmerling
(Fri Feb 09 2018 - 07:00:43 PST)
Rui, Huan
(Fri Feb 09 2018 - 06:57:14 PST)
[AMBER] STSM sample files
Feng Pan
(Mon Feb 12 2018 - 11:26:01 PST)
Szymon Żaczek
(Mon Feb 12 2018 - 00:48:31 PST)
[AMBER] The unperturbed charge of the unit is not integral": really nothing to care about?
David A Case
(Thu Feb 22 2018 - 09:33:36 PST)
Nikolay N. Kuzmich
(Thu Feb 22 2018 - 08:18:49 PST)
[AMBER] The unperturbed charge of the unit is not integral: really nothing to care about?
Nikolay N. Kuzmich
(Fri Feb 23 2018 - 09:33:07 PST)
[AMBER] Thermodynamic Integration query
Sowmya Indrakumar
(Wed Feb 14 2018 - 01:19:53 PST)
Daniel Mermelstein
(Tue Feb 13 2018 - 22:03:47 PST)
Sowmya Indrakumar
(Fri Feb 02 2018 - 02:15:48 PST)
[AMBER] Torsion angle frequency
Roitberg,Adrian E
(Fri Feb 16 2018 - 11:45:45 PST)
Yuliana Bosken
(Fri Feb 16 2018 - 11:35:56 PST)
Lizelle Lubbe
(Thu Feb 15 2018 - 23:56:30 PST)
[AMBER] Trajectory processing
Daniel Roe
(Fri Feb 09 2018 - 05:48:13 PST)
Ming Tang
(Thu Feb 08 2018 - 16:39:51 PST)
[AMBER] trouble with pdb4amber
David A Case
(Mon Feb 26 2018 - 14:50:57 PST)
Hai Nguyen
(Mon Feb 26 2018 - 07:45:03 PST)
Jennifer L. Muzyka
(Mon Feb 26 2018 - 06:49:42 PST)
Jennifer L. Muzyka
(Mon Feb 26 2018 - 06:44:25 PST)
Jennifer L. Muzyka
(Mon Feb 26 2018 - 06:20:01 PST)
Jennifer L. Muzyka
(Mon Feb 26 2018 - 06:18:52 PST)
Hai Nguyen
(Sun Feb 25 2018 - 10:38:50 PST)
David A Case
(Sun Feb 25 2018 - 09:52:45 PST)
Jennifer L. Muzyka
(Sun Feb 25 2018 - 09:18:12 PST)
[AMBER] Units used in ff14sb
John Chodera
(Tue Feb 06 2018 - 15:18:47 PST)
Siddhartha Jain
(Mon Feb 05 2018 - 08:40:50 PST)
Carlos Simmerling
(Mon Feb 05 2018 - 08:30:37 PST)
Siddhartha Jain
(Mon Feb 05 2018 - 08:15:35 PST)
Carlos Simmerling
(Mon Feb 05 2018 - 08:06:47 PST)
Siddhartha Jain
(Sun Feb 04 2018 - 14:16:41 PST)
[AMBER] Updated Website
James Kress
(Mon Feb 05 2018 - 11:47:42 PST)
[AMBER] Use amber output velocity for different system
Daniel Roe
(Thu Feb 01 2018 - 06:06:48 PST)
[AMBER] Using solvatebox with a SO2 molecule - difficulties in adding duplicate oxygen atoms in .pdb
David A Case
(Thu Feb 22 2018 - 09:36:45 PST)
M Conte
(Thu Feb 22 2018 - 08:52:48 PST)
[AMBER] visualization of long simulation data with out downloading .mdcrd file
Elvis Martis
(Wed Feb 21 2018 - 05:43:37 PST)
Rana Rehan Khalid
(Wed Feb 21 2018 - 05:23:27 PST)
[AMBER] workshop amber Technion Israel
Fabian Glaser
(Mon Feb 19 2018 - 23:41:38 PST)
Last message date
:
Wed Feb 28 2018 - 21:00:03 PST
Archived on
: Fri Dec 13 2024 - 05:55:38 PST
311 messages
sort by
: [
thread
] [
author
] [
date
] [ subject ] [
attachment
]
Custom Search