[AMBER] B-factor Values

From: Mac Kevin Braza <mebraza.up.edu.ph>
Date: Fri, 9 Feb 2018 15:12:34 +0800

Hello,

I am calculating atomic fluctuation of a GPCR protein using cpptraj
atomicfluct bfactor. Specifically, I am calculating the backbone
fluctuation with .CA,C,N of the specific domain I am looking at. However,
it seems that the B-factor I calculated exceed from >1000 up to >15,000. Is
this normal?

I attached here the input file I used.

Thank you very much!

Regards,
Mac Kevin E. Braza


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber

Received on Thu Feb 08 2018 - 23:30:03 PST
Custom Search