#Reading trajectory files of apo (non-liganded)

parm ../../../01-tyr/try.top

trajin ../../../01-tyr/output/prod1.dcd
trajin ../../../01-tyr/output/prod2.dcd
trajin ../../../01-tyr/output/prod3.dcd
trajin ../../../01-tyr/output/prod4.dcd
trajin ../../../01-tyr/output/prod5.dcd
trajin ../../../01-tyr/output/prod6.dcd
trajin ../../../01-tyr/output/prod7.dcd
trajin ../../../01-tyr/output/prod8.dcd
trajin ../../../01-tyr/output/prod9.dcd
trajin ../../../01-tyr/output/prod10.dcd
trajin ../../../01-tyr/output/prod11.dcd
trajin ../../../01-tyr/output/prod12.dcd
trajin ../../../01-tyr/output/prod13.dcd
trajin ../../../01-tyr/output/prod14.dcd
trajin ../../../01-tyr/output/prod15.dcd
trajin ../../../01-tyr/output/prod16.dcd
trajin ../../../01-tyr/output/prod17.dcd
trajin ../../../01-tyr/output/prod18.dcd
trajin ../../../01-tyr/output/prod19.dcd
trajin ../../../01-tyr/output/prod20.dcd

strip :WAT
strip :K+
strip :Cl-
strip :PA
strip :PC
strip :OL

center :1-455
image center

rms first out sotyr_tyramine_EL1_rmsd.dat :1-33@CA,C,N
rms first out sotyr_tyramine_TM1_rmsd.dat :34-60@CA,C,N
rms first out sotyr_tyramine_IL1_rmsd.dat :61-71@CA,C,N
rms first out sotyr_tyramine_TM2_rmsd.dat :72-97@CA,C,N
rms first out sotyr_tyramine_EL2_rmsd.dat :98-108@CA,C,N
rms first out sotyr_tyramine_TM3_rmsd.dat :109-130@CA,C,N
rms first out sotyr_tyramine_IL2_rmsd.dat :131-150@CA,C,N
rms first out sotyr_tyramine_TM4_rmsd.dat :151-171@CA,C,N
rms first out sotyr_tyramine_EL3_rmsd.dat :172-204@CA,C,N
rms first out sotyr_tyramine_TM5_rmsd.dat :205-223@CA,C,N
rms first out sotyr_tyramine_IL3_rmsd.dat :224-382@CA,C,N
rms first out sotyr_tyramine_TM6_rmsd.dat :383-404@CA,C,N
rms first out sotyr_tyramine_EL4_rmsd.dat :405-415@CA,C,N
rms first out sotyr_tyramine_TM7_rmsd.dat :416-438@CA,C,N
rms first out sotyr_tyramine_IL4_rmsd.dat :438-455@CA,C,N

atomicfluct out sotyr_tyramine_EL1_bfactor.dat byres bfactor :1-33@CA,C,N
atomicfluct out sotyr_tyramine_TM1_bfactor.dat byres bfactor :34-60@CA,C,N
atomicfluct out sotyr_tyramine_IL1_bfactor.dat byres bfactor :61-71@CA,C,N
atomicfluct out sotyr_tyramine_TM2_bfactor.dat byres bfactor :72-97@CA,C,N
atomicfluct out sotyr_tyramine_EL2_bfactor.dat byres bfactor :98-108@CA,C,N
atomicfluct out sotyr_tyramine_TM3_bfactor.dat byres bfactor :109-130@CA,C,N
atomicfluct out sotyr_tyramine_IL2_bfactor.dat byres bfactor :131-150@CA,C,N
atomicfluct out sotyr_tyramine_TM4_bfactor.dat byres bfactor :151-171@CA,C,N
atomicfluct out sotyr_tyramine_EL3_bfactor.dat byres bfactor :172-204@CA,C,N
atomicfluct out sotyr_tyramine_TM5_bfactor.dat byres bfactor :205-223@CA,C,N
atomicfluct out sotyr_tyramine_IL3_bfactor.dat byres bfactor :224-382@CA,C,N
atomicfluct out sotyr_tyramine_TM6_bfactor.dat byres bfactor :383-404@CA,C,N
atomicfluct out sotyr_tyramine_EL4_bfactor.dat byres bfactor :405-415@CA,C,N
atomicfluct out sotyr_tyramine_TM7_bfactor.dat byres bfactor :416-438@CA,C,N
atomicfluct out sotyr_tyramine_IL4_bfactor.dat byres bfactor :438-455@CA,C,N








