[AMBER] Fwd: B-factor Values

From: Mac Kevin Braza <mebraza.up.edu.ph>
Date: Fri, 9 Feb 2018 15:13:44 +0800

---------- Forwarded message ----------
From: Mac Kevin Braza <mebraza.up.edu.ph>
Date: Fri, Feb 9, 2018 at 3:12 PM
Subject: B-factor Values
To: AMBER.ambermd.org


Hello,

I am calculating atomic fluctuation of a GPCR protein using cpptraj
atomicfluct bfactor. Specifically, I am calculating the backbone
fluctuation with .CA,C,N of the specific domain I am looking at. However,
it seems that the B-factor I calculated exceed from >1000 up to >15,000. Is
this normal?

I attached here the input file I used.

Thank you very much!

Regards,
Mac Kevin E. Braza


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Received on Thu Feb 08 2018 - 23:30:04 PST
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