Re: [AMBER] add vertical lines for initial and final angle

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Tue, 20 Feb 2018 12:13:02 -0500

Hi,

There's no option to explicitly do it. I usually just add a dummy data
set with 2 points (either via the grace GUI or creating a separate
file) that will draw the lines. So if your minimum value is -100 you
could do something like:

-100 0
-100 1

-Dan


On Mon, Feb 19, 2018 at 7:41 AM, Rosellen, Martin
<martin.rosellen.16.ucl.ac.uk> wrote:
> Hi all,
>
> I want to add vertical lines to my histograms at the position of the initial and final angle values. With cpptraj after reading in parm and trajin, I generate histograms like this:
>
> multidihedral phi_26 phi resrange 26 out phi_26.agr
> go
> multihist phi_26[*] out hist.phi_26.agr normint min -180 max 180 step 1
> stat all out stat.phi_26.dat
> go
>
> In the stats I find the initial and final angle value.
>
> Is there a way to tell cpptraj to add vertical lines or do you maybe know how to add this information to the header of the xmgrace .agr files later on?
>
> cheers
> Martin
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-- 
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Tue Feb 20 2018 - 09:30:03 PST
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