[AMBER] Enquiry on ntt

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From: Ming Tang <m21.tang.qut.edu.au>
Date: Thu, 22 Feb 2018 11:22:08 +0000

Dear experts,

I want to study the viscosity of a protein in water using amber. Based on the literature, the Lowe-Anderson thermostat provides more accurate viscosity than the Langevin thermostat in NAMD. I found that AMBER does not have the Lowe-Anderson thermostat, but has Anderson thermostat. NAMD is not available to me. May I ask which thermostat in AMBER gives a better characterization of the viscosity?

Thanks very much,

Ming
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Received on Thu Feb 22 2018 - 03:30:02 PST