Hi and thanks Hai,
now I'm getting get this error:
creating build/lib.linux-x86_64-2.7/pytraj/utils/css
copying pytraj/utils/css/oceans16.css ->
build/lib.linux-x86_64-2.7/pytraj/utils/css
running build_ext
building 'pytraj.cpp_options' extension
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/pytraj
gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-prototypes -fPIC -I/home/elisa/amber16/AmberTools/src/cpptraj/src
-I/home/elisa/amber16/AmberTools/src/pytraj/pytraj
-I/home/elisa/amber16/miniconda/include/python2.7 -c pytraj/cpp_options.cpp
-o build/temp.linux-x86_64-2.7/pytraj/cpp_options.o -O0 -ggdb
-Wl,-rpath=/home/elisa/amber16/lib
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for
C/ObjC but not for C++
pytraj/cpp_options.cpp: In function ‘PyObject*
__pyx_pf_6pytraj_11cpp_options_2set_error_silent(PyObject*, PyObject*)’:
pytraj/cpp_options.cpp:803:28: error: ‘SupressErrorMsg’ was not declared in
this scope
SupressErrorMsg(__pyx_t_1);
^
error: command 'gcc' failed with exit status 1
Makefile:508: recipe for target 'pytraj' failed
make[2]: *** [pytraj] Error 1
make[2]: Leaving directory '/home/elisa/amber16/AmberTools/src'
Makefile:17: recipe for target 'serial' failed
make[1]: *** [serial] Error 2
make[1]: Leaving directory '/home/elisa/amber16/AmberTools/src'
Makefile:7: recipe for target 'install' failed
make: *** [install] Error 2
Is there a problem with my gcc compiler? Its version is "gcc (Ubuntu
5.4.0-6ubuntu1~16.04.6) 5.4.0 20160609"
Elisa
On Tue, Feb 13, 2018 at 1:30 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:
> Hi, can you try remove that bin/FEW.pl and “make install” again?
>
> Hai
>
> On Tue, Feb 13, 2018 at 4:46 AM Elisa Pieri <elisa.pieri90.gmail.com>
> wrote:
>
> > Hello,
> >
> > apparently I'm not lucky with this reinstallation..everything in the
> > "./configure gnu" was fine, but then I get this from the "make install":
> >
> > make[4]: Entering directory
> >
> > '/home/elisa/amber16/AmberTools/src/FEW/additional_
> libs/PerlMol-0.3500/Parse-Yapp-1.05'
> > Manifying 1 pod document
> > Manifying 1 pod document
> > make[4]: Leaving directory
> >
> > '/home/elisa/amber16/AmberTools/src/FEW/additional_
> libs/PerlMol-0.3500/Parse-Yapp-1.05'
> > Manifying 1 pod document
> > Appending installation info to
> >
> > /home/elisa/amber16/lib/perl//lib/x86_64-linux-gnu/perl/5.
> 22.1/perllocal.pod
> > make[3]: Leaving directory
> > '/home/elisa/amber16/AmberTools/src/FEW/additional_libs/PerlMol-0.3500'
> > cp -f /home/elisa/amber16/AmberTools/src/FEW/FEW.pl
> /home/elisa/amber16/bin
> > cp: '/home/elisa/amber16/AmberTools/src/FEW/FEW.pl' and
> > '/home/elisa/amber16/bin/FEW.pl' are the same file
> > Makefile:5: recipe for target 'install' failed
> > make[2]: *** [install] Error 1
> > make[2]: Leaving directory '/home/elisa/amber16/AmberTools/src/FEW'
> > Makefile:17: recipe for target 'serial' failed
> > make[1]: *** [serial] Error 2
> > make[1]: Leaving directory '/home/elisa/amber16/AmberTools/src'
> > Makefile:7: recipe for target 'install' failed
> > make: *** [install] Error 2
> >
> > Can you help me?
> > Elisa
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Feb 13 2018 - 05:30:01 PST
