Hi,
One thing I can suggest is to strip off all the waters and neutralizing ions and then try to load in VMD.
Also, remember to strip off waters and neutralizing ions from prmtop file also before loading on to VMD.
Best Regards
Elvis Martis
Mumbai, INDIA.
________________________________________
From: Rana Rehan Khalid <rrkhalid.umich.edu>
Sent: 21 February 2018 18:53
To: AMBER Mailing List
Subject: [AMBER] visualization of long simulation data with out downloading .mdcrd file
Dear Amber Users
I ran the long simulation for 50 ns, Now i can not download it to visualize
in vmd because of large size, how i can visualize it without downloading
it. Before that i normally ran the same 50 ns in 10 steps which is easy to
download and visualize in vmd but how we can visualize long simulation.
Thanks
Regards
Rana
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Received on Wed Feb 21 2018 - 06:00:05 PST
