Hello,
I'm reinstalling Amber16 on my machine, but I get this error in the
updating:
10:20:49 $ ./configure gnu
Checking for updates...
Checking for available patches online. This may take a few seconds...
Available AmberTools 17 patches:
No patches available
Available Amber 16 patches:
update.9 (modifies pmemd)
Description:
a) Add the &pmd, &bbmd and &stsm module to PMEMD
b) Fix the bug when running with NPT ensemble
c) Fix the bug which leads to wrong work in &smd
update.10 (modifies pmemd, pmemd.cuda)
Description:
fixes a vulnerability that would have allowed LJ 12-6-4 to be
applied with incompatible options.
update.11 (modifies pmemd)
Description:
fixes gamd log output for multiple gamd simulations.
update.12 (modifies pmemd.cuda, &, pmemd.cuda.MPI)
Description:
Fixes nstep and dt being broken for oscillating electric fields.
There are patches available. Do you want to apply them now? [y/N]
(Recommended Y)
y
Preparing to apply updates... please wait.
No new updates available for AmberTools 17
Applying Amber 16/update.9
PatchingError: .patches/Amber16_Unapplied_Patches/update.9 failed to apply.
No changes made from this patch
Automatic patching failed! Check the errors before re-configuring
This is the result of "patch -p0 -N --dry-run <
.patches/Amber16_Unapplied_Patches/update.9":
checking file src/pmemd/src/Makefile
Hunk #1 FAILED at 55.
1 out of 1 hunk FAILED
checking file src/pmemd/src/f90depends
Hunk #1 FAILED at 482.
Hunk #2 FAILED at 494.
Hunk #3 FAILED at 986.
3 out of 3 hunks FAILED
checking file src/pmemd/src/gb_force.F90
Hunk #1 FAILED at 339.
1 out of 1 hunk FAILED
checking file src/pmemd/src/nfe_abmd.F90
checking file src/pmemd/src/nfe_bbmd.F90
checking file src/pmemd/src/nfe_colvar.F90
checking file src/pmemd/src/nfe_lib.F90
checking file src/pmemd/src/nfe_pmd.F90
checking file src/pmemd/src/nfe_setup.F90
checking file src/pmemd/src/nfe_smd.F90
checking file src/pmemd/src/nfe_stsm.F90
checking file src/pmemd/src/pme_force.F90
Hunk #1 FAILED at 468.
Hunk #2 FAILED at 1487.
2 out of 2 hunks FAILED
checking file src/pmemd/src/runmd.F90
Hunk #1 FAILED at 83.
Hunk #2 FAILED at 2945.
Hunk #3 FAILED at 2960.
3 out of 3 hunks FAILED
What is going on?
Thank you,
Elisa
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Received on Tue Feb 13 2018 - 01:30:02 PST
