Dear Amber Users,
I am trying to restrain the distance of a group of residues on a
protein. I know that I have to use "sander" and impose NMR restraints(based
on AMBER manual). But as far as I understand, I have to do it for every
atom, and there are lots of atoms in these target residues. So is there a
better way to just use the residue numbers, and fix the initial distances,
in a way that they would not change during the MD simulations?
Sincerely,
--
Armin Hodaei
Department of Physics,
Faculty of Arts and Sciences
Koc University, Istanbul
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Received on Wed Jan 31 2018 - 15:30:02 PST
