Re: [AMBER] Adding divalent ions in LEaP

From: David A Case <david.case.rutgers.edu>
Date: Fri, 9 Feb 2018 07:46:51 -0500

On Fri, Feb 09, 2018, Nikolay N. Kuzmich wrote:

> AddIons command didn't work here.

The two likely problems:

  a. You didn't source a leaprc.water.xxx file, and hence did not get
       divalent ions loaded. You can check this using the "list" command
       tleap to see if you have (say) a unit called MG.

  b. You made some mistake in calling addions.

If looking closely at the tleap output doesn't pinpoint the problem, please
provide the complete tleap commands and the associated error message.

....dac


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Received on Fri Feb 09 2018 - 05:00:02 PST
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