We are working through the tutorials for AmberTools 17 found in the Amber 2017 manual. We get stuck on the one involving pdb4amber (page 200). When we use the command pdb4amber -i orig.pdb, -o new.pdb —reduce —dry, we get a message that says
Traceback (most recent call last):
File “/opt/amber16/bin/pdb4amber”, line 6, in <module>
from pdb4amber import pdb4amber
ImportError: No module named pdb4amber
This error message confuses us, as we can see a file named pdb4amber in the amber/bin directory. We’d appreciate any information you can offer about what’s going on. I assume that perhaps I went wrong somewhere in the installation process.
Thanks.
Jennifer
Jennifer Muzyka
Stodghill Professor of Chemistry
Centre College
600 West Walnut Street
Danville, KY 40422
jennifer.muzyka.centre.edu<mailto:
jennifer.muzyka.centre.edu>
http://web.centre.edu/muzyka
http://organicers.org
859-238-5413
fax 859-236-7925
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Received on Sun Feb 25 2018 - 09:30:02 PST
