Amber Archive Mar 2020: by date

Sunday, 1 March 2020
- Re: [AMBER] Issue in drug parameter David A Case
- [AMBER] Issue in drug parameter SHAUNAK BADANI
- Re: [AMBER] Issue in drug parameter David A Case
- Re: [AMBER] Issue in drug parameter Carlos Simmerling
- [AMBER] AMBER 18 compilation error with CUDA 10.2 Abhilash J
- [AMBER] g09 genecp in QM/MM MD in amber Vaibhav Dixit
Monday, 2 March 2020
- Re: [AMBER] replica exchange with GPU bbalta.itu.edu.tr
- Re: [AMBER] replica exchange with GPU Alessandro Contini
- [AMBER] problem adding MG.off file Nicolas Feldman
- Re: [AMBER] replica exchange with GPU Cruzeiro,Vinicius Wilian D
- Re: [AMBER] g09 genecp in QM/MM MD in amber James Kress
- [AMBER] Question of units James Kress
- Re: [AMBER] Question of units David A Case
- Re: [AMBER] Question of units James Kress
- Re: [AMBER] g09 genecp in QM/MM MD in amber Vaibhav Dixit
Tuesday, 3 March 2020
- [AMBER] tar-MD with custom J-coupling relation Dieter Buyst
- Re: [AMBER] tar-MD with custom J-coupling relation Christina Bergonzo
- [AMBER] CUDA single gpu usage issue Nicholas Moyer
- Re: [AMBER] CUDA single gpu usage issue David A Case
- [AMBER] dvdl.dat file details AMBER18 TI Debarati DasGupta
- Re: [AMBER] CUDA single gpu usage issue Ray Luo
- Re: [AMBER] CUDA single gpu usage issue Nicholas Moyer
- Re: [AMBER] CUDA single gpu usage issue Nicholas Moyer
- Re: [AMBER] CUDA single gpu usage issue Ray Luo
- Re: [AMBER] CUDA single gpu usage issue Abhilash J
- Re: [AMBER] CUDA single gpu usage issue Nicholas Moyer
- Re: [AMBER] CUDA single gpu usage issue Ray Luo
- Re: [AMBER] CUDA single gpu usage issue Manish Manish
Wednesday, 4 March 2020
- Re: [AMBER] CUDA single gpu usage issue Ruxi Qi
- Re: [AMBER] CUDA single gpu usage issue Ruxi Qi
- [AMBER] adding Na, K and Cl ions matching intracellular conc Vaibhav Dixit
- Re: [AMBER] AMBER 18 compilation error with CUDA 10.2 Ruxi Qi
- Re: [AMBER] CUDA single gpu usage issue Nicholas Moyer
- [AMBER] KeyError: 'MG' Filipa Mendonça
- Re: [AMBER] CUDA single gpu usage issue Abhilash J
- Re: [AMBER] CUDA single gpu usage issue Ray Luo
- Re: [AMBER] tleap/xleap performance enhancement Himanshu Joshi
- [AMBER] Citing DNA OL15 forcefield Sruthi Sudhakar
- [AMBER] Are the 6-character atom types of CGenFF compatible with parmed-chamber David Sáez
- Re: [AMBER] Citing DNA OL15 forcefield Christina Bergonzo
- Re: [AMBER] adding Na, K and Cl ions matching intracellular conc Matias Machado
- Re: [AMBER] adding Na, K and Cl ions matching intracellular conc Matias Machado
- [AMBER] problem in MCPB.py wujue
- Re: [AMBER] adding Na, K and Cl ions matching intracellular conc Vaibhav Dixit
Thursday, 5 March 2020
- Re: [AMBER] Citing DNA OL15 forcefield Sruthi Sudhakar
- [AMBER] QM/MM Convergence questions 辛志宏
- Re: [AMBER] QM/MM Convergence questions Busra Demir
- [AMBER] error job.sh MYRIAN TORRES RICO
- Re: [AMBER] error job.sh Gustaf Olsson
- [AMBER] TI production error in nstep =1 Debarati DasGupta
- Re: [AMBER] Are the 6-character atom types of CGenFF compatible with parmed-chamber David Sáez
- Re: [AMBER] Are the 6-character atom types of CGenFF compatible with parmed-chamber David Sáez
- Re: [AMBER] QM/MM Convergence questions 辛志宏
- [AMBER] Modified force fields ankita mehta
- [AMBER] linear interaction energy tool in AMBER Akshay Prabhakant
- Re: [AMBER] CUDA single gpu usage issue Ray Luo
- [AMBER] Amber parameters for heme b / d coordinated with deprotonated tyrosine HOCHEOL LIM
Friday, 6 March 2020
- [AMBER] When I use fitted parameters as initial parameters in paramfit, I am getting different results? Erdem Yeler
- Re: [AMBER] TI production error in nstep =1 David A Case
- Re: [AMBER] QM/MM Convergence questions David A Case
- Re: [AMBER] Modified force fields David A Case
- Re: [AMBER] CUDA single gpu usage issue Nicholas Moyer
- Re: [AMBER] TI production error in nstep =1 Debarati DasGupta
- Re: [AMBER] adding Na, K and Cl ions matching intracellular conc Matias Machado
- Re: [AMBER] adding Na, K and Cl ions matching intracellular conc Matias Machado
- Re: [AMBER] adding Na, K and Cl ions matching intracellular conc Vaibhav Dixit
- Re: [AMBER] linear interaction energy tool in AMBER Adrian Roitberg
- Re: [AMBER] When I use fitted parameters as initial parameters in paramfit, I am getting different results? David Cerutti
- Re: [AMBER] When I use fitted parameters as initial parameters in paramfit, I am getting different results? Robin Betz
- Re: [AMBER] CUDA single gpu usage issue Abhilash J
- Re: [AMBER] Query regarding 3DRISM in Amber with CHARMM force field Rakesh Srivastava
- [AMBER] Unavailability of the file related to -cprestrt flag in equilibration (NPT) step of constant pH MD in Amber14 with AmberTools15 SATYAJIT KHATUA
Saturday, 7 March 2020
- [AMBER] Inconsistency in energy values between out files and cpptraj SHAUNAK BADANI
- [AMBER] 2DRMS before clustering Debarati DasGupta
- Re: [AMBER] 2DRMS before clustering Rodrigo Galindo-Murillo
Sunday, 8 March 2020
- [AMBER] AmberTools19 install error Raman Preet Singh
- Re: [AMBER] AmberTools19 install error David A Case
- Re: [AMBER] Modified force fields ankita mehta
- Re: [AMBER] AmberTools19 install error Raman Preet Singh
- Re: [AMBER] AmberTools19 install error Gustaf Olsson
- Re: [AMBER] Modified force fields Kellon Belfon
- Re: [AMBER] Modified force fields ankita mehta
Monday, 9 March 2020
- Re: [AMBER] When I use fitted parameters as initial parameters in paramfit, I am getting different results? Erdem Yeler
- Re: [AMBER] QM/MM Convergence questions 辛志宏
- [AMBER] AMBER19: error in reading namelist cntrl geyushu.ustc.edu.cn
- [AMBER] Question about MMPBSA calculation Rinsha Chk
- Re: [AMBER] AMBER19: error in reading namelist cntrl Gustaf Olsson
- Re: [AMBER] Question about MMPBSA calculation Elvis Martis
- Re: [AMBER] When I use fitted parameters as initial parameters in paramfit, I am getting different results? Erdem Yeler
- Re: [AMBER] AmberTools19 install error Raman Preet Singh
- Re: [AMBER] Question about MMPBSA calculation Rinsha Chk
- [AMBER] Modified force fields ankita mehta
- Re: [AMBER] Modified force fields Carlos Simmerling
- Re: [AMBER] When I use fitted parameters as initial parameters in paramfit, I am getting different results? David Cerutti
- Re: [AMBER] QM/MM Convergence questions Goetz, Andreas
- [AMBER] QM/MM Convergence questions 辛志宏
Tuesday, 10 March 2020
- [AMBER] AmberTools on Ubuntu 19.04: compilation emanuele falbo
- Re: [AMBER] AmberTools on Ubuntu 19.04: compilation David A Case
- [AMBER] sieve keyword in cpptraj clustering Debarati DasGupta
- [AMBER] Incosistency in energy values from out files and cpptraj energy tools SHAUNAK BADANI
- Re: [AMBER] AmberTools on Ubuntu 19.04: compilation emanuele falbo
- Re: [AMBER] Incosistency in energy values from out files and cpptraj energy tools Daniel Roe
- Re: [AMBER] Inconsistency in energy values between out files and cpptraj Daniel Roe
- Re: [AMBER] Modified force fields ankita mehta
- [AMBER] Found an invalid periodicity in the prmtop file: ... CalcError: bin/mmpbsa_py_energy failed with prmtop .prmtop! Harold Grosjean
- Re: [AMBER] Modified force fields Kellon Belfon
- Re: [AMBER] Modified force fields Carlos Simmerling
- Re: [AMBER] Modified force fields David A Case
- Re: [AMBER] Found an invalid periodicity in the prmtop file: ... CalcError: bin/mmpbsa_py_energy failed with prmtop .prmtop! David A Case
- [AMBER] REMD hybrid solvent model Hosein Geraili Daronkola
- Re: [AMBER] REMD hybrid solvent model koushik kasavajhala
- Re: [AMBER] REMD hybrid solvent model Carlos Simmerling
Wednesday, 11 March 2020
- [AMBER] What is the default pH when loading a protein in Amber environment Siavoush Dastmalchi
- Re: [AMBER] What is the default pH when loading a protein in Amber environment Carlos Simmerling
- Re: [AMBER] REMD hybrid solvent model Hosein Geraili Daronkola
- Re: [AMBER] REMD hybrid solvent model Carlos Simmerling
- [AMBER] DBscan gives me errors in clustering Debarati DasGupta
- Re: [AMBER] REMD hybrid solvent model Hosein Geraili Daronkola
- [AMBER] Reg: MMGBSA for NAMD trajectory Lara rajam
- Re: [AMBER] REMD hybrid solvent model Carlos Simmerling
- Re: [AMBER] REMD hybrid solvent model koushik
- [AMBER] units of the calculated diffusion coefficient Chetna Tyagi
- Re: [AMBER] Reg: MMGBSA for NAMD trajectory David A Case
Thursday, 12 March 2020
- Re: [AMBER] When I use fitted parameters as initial parameters in paramfit, I am getting different results? Erdem Yeler
- [AMBER] EXTRACTING A PARTICULAR FRAME Sruthi Sudhakar
- Re: [AMBER] EXTRACTING A PARTICULAR FRAME Gustaf Olsson
- Re: [AMBER] EXTRACTING A PARTICULAR FRAME Sruthi Sudhakar
- Re: [AMBER] EXTRACTING A PARTICULAR FRAME Gustaf Olsson
- [AMBER] simulations of proteins with 2 domains connected by a linker Vlad Cojocaru
- Re: [AMBER] EXTRACTING A PARTICULAR FRAME Sruthi Sudhakar
- [AMBER] Modified AA residue without NH2 end. Petro
- Re: [AMBER] Modified AA residue without NH2 end. Carlos Simmerling
- [AMBER] What's the least biased way to stop a molecule from crossing a periodic boundary? Homeo Morphism
- Re: [AMBER] What's the least biased way to stop a molecule from crossing a periodic boundary? Carlos Simmerling
- Re: [AMBER] What's the least biased way to stop a molecule from crossing a periodic boundary? Carlos Simmerling
- Re: [AMBER] simulations of proteins with 2 domains connected by a linker Carlos Simmerling
- [AMBER] unusual planarity change during md. Sruthi Sudhakar
- Re: [AMBER] unusual planarity change during md. Adrian Roitberg
- [AMBER] mmpbsa_py_energy failed with prmtop dim_gas.prmtop Azahara.Doncel.uv.es
- [AMBER] problems implementing tiMerge for base pair mutation Gabriel Jara
- Re: [AMBER] EXTRACTING A PARTICULAR FRAME Daniel Roe
- Re: [AMBER] units of the calculated diffusion coefficient Daniel Roe
- Re: [AMBER] EXTRACTING A PARTICULAR FRAME koushik kasavajhala
- Re: [AMBER] EXTRACTING A PARTICULAR FRAME Daniel Roe
- Re: [AMBER] simulations of proteins with 2 domains connected by a linker Vlad Cojocaru
- Re: [AMBER] AMBER Digest, Vol 2934, Issue 1 SATYAJIT KHATUA
- [AMBER] AmberTools19 serial installation test errors Mariana Simoes Ferreira
- [AMBER] TI runs on GPU Debarati DasGupta
Friday, 13 March 2020
- [AMBER] Questions on force field Sasthi Mandal
- Re: [AMBER] AmberTools19 serial installation test errors Gustaf Olsson
- Re: [AMBER] TI runs on GPU David A Case
- Re: [AMBER] Questions on force field David A Case
- [AMBER] Not recognising output file for N_OF_BONDS reaction coordinate Vishal Reddy
Saturday, 14 March 2020
- [AMBER] information regarding space filling visualization Prasanth G, Research Scholar
- Re: [AMBER] information regarding space filling visualization Elvis Martis
- Re: [AMBER] information regarding space filling visualization Carlos Simmerling
- Re: [AMBER] information regarding space filling visualization Ahmed Elrashedy
- [AMBER] Lone Pairs in AMBER FF 杨明俊
- Re: [AMBER] Lone Pairs in AMBER FF Carlos Simmerling
- [AMBER] Boron compunds with "pdb" file with novel frcmod file Erdem Yeler
- [AMBER] GAFF/AMBER peptide bond Petro
- Re: [AMBER] GAFF/AMBER peptide bond Song, Lin
- Re: [AMBER] GAFF/AMBER peptide bond Petro
- Re: [AMBER] GAFF/AMBER peptide bond Song, Lin
- Re: [AMBER] GAFF/AMBER peptide bond Carlos Simmerling
- Re: [AMBER] GAFF/AMBER peptide bond Petro
- Re: [AMBER] Lone Pairs in AMBER FF 杨明俊
Sunday, 15 March 2020
- [AMBER] how to turned off C N terminal amino in tleap Yeng-Tseng Wang
- [AMBER] About the D form amino amber force field Yeng-Tseng Wang
- Re: [AMBER] how to turned off C N terminal amino in tleap Petro
- Re: [AMBER] About the D form amino amber force field Carlos Simmerling
- Re: [AMBER] Lone Pairs in AMBER FF David A Case
- Re: [AMBER] TI runs on GPU Debarati DasGupta
- Re: [AMBER] About the D form amino amber force field Yeng-Tseng Wang
- Re: [AMBER] Boron compunds with "pdb" file with novel frcmod file David A Case
- [AMBER] CUDA version for AMBER 16 and 20? Michael Shokhen
Monday, 16 March 2020
- [AMBER] Texas red force field Tiejun Wei
- Re: [AMBER] parameters for Si3N4 Akshay Prabhakant
Tuesday, 17 March 2020
- [AMBER] If a non-standard force field is used for proteins, how would you approach parameterization of lipids and ligands? Homeo Morphism
- Re: [AMBER] If a non-standard force field is used for proteins, how would you approach parameterization of lipids and ligands? Carlos Simmerling
- Re: [AMBER] Boron compunds with "pdb" file with novel frcmod file Erdem Yeler
- [AMBER] issue while installing AMBER tools on windows10 Linux subsystem Ana Ziad
- [AMBER] A problem of "Could not import Amber Python modules" 唐元晖
Wednesday, 18 March 2020
- Re: [AMBER] A problem of "Could not import Amber Python modules" 唐元晖
- Re: [AMBER] A problem of "Could not import Amber Python modules" David A Case
- Re: [AMBER] issue while installing AMBER tools on windows10 Linux subsystem Gustaf Olsson
- [AMBER] Clustering analysis Debarati DasGupta
Thursday, 19 March 2020
- Re: [AMBER] Lone Pairs in AMBER FF 杨明俊
Friday, 20 March 2020
- [AMBER] Ambmask Error in group input::atommask.f::pop_evalstack stack underflow Oliver Grant
- [AMBER] about TREE_CHAIN_CLASSIFICATION Thomas Gaillard
- Re: [AMBER] about TREE_CHAIN_CLASSIFICATION David A Case
- Re: [AMBER] issue while installing AMBER tools on windows10 Linux subsystem Ana Ziad
- Re: [AMBER] issue while installing AMBER tools on windows10 Linux subsystem David A Case
- Re: [AMBER] issue while installing AMBER tools on windows10 Linux subsystem Ana Ziad
- [AMBER] setting pdb file Nicolas Feldman
- Re: [AMBER] setting pdb file Daniel Roe
- Re: [AMBER] setting pdb file Nicolas Feldman
- Re: [AMBER] setting pdb file Carlos Simmerling
- Re: [AMBER] setting pdb file Nicolas Feldman
- [AMBER] "Error of reading the .dat file" in MCPB.py step 2 Gustavo Seabra
- Re: [AMBER] setting pdb file Gustaf Olsson
- Re: [AMBER] setting pdb file Nicolas Feldman
- Re: [AMBER] issue while installing AMBER tools on windows10 Linux subsystem Gustaf Olsson
- Re: [AMBER] setting pdb file Gustaf Olsson
- Re: [AMBER] setting pdb file Nicolas Feldman
- Re: [AMBER] setting pdb file Carlos Simmerling
Saturday, 21 March 2020
- Re: [AMBER] issue while installing AMBER tools on windows10 Linux subsystem Ana Ziad
- Re: [AMBER] setting pdb file Nicolas Feldman
- [AMBER] RTX 2020 Super GPU Random Memorry Errors Giorgos Lambrinidis
- [AMBER] RTX 2020 Super GPU Random Memory Errors Giorgos Lambrinidis
- Re: [AMBER] RTX 2020 Super GPU Random Memory Errors David Cerutti
- Re: [AMBER] RTX 2020 Super GPU Random Memory Errors Stephan Schott
Sunday, 22 March 2020
- Re: [AMBER] RTX 2020 Super GPU Random Memory Errors Giorgos Lambrinidis
- [AMBER] Clustering query Debarati DasGupta
- Re: [AMBER] Clustering query Elvis Martis
- [AMBER] questions about paramfit and frcmod file ttz
- [AMBER] Installation problem for a parallel version of Amber18/AmberTools19 Kosuke Tachibana
- Re: [AMBER] questions about paramfit and frcmod file David Cerutti
Monday, 23 March 2020
- [AMBER] ** NFE-Error ** : Cannot read &colvar namelist! Vishal Reddy
- Re: [AMBER] Installation problem for a parallel version of Amber18/AmberTools19 David A Case
- Re: [AMBER] ** NFE-Error ** : Cannot read &colvar namelist! Feng Pan
- Re: [AMBER] questions about paramfit and frcmod file ttz
Tuesday, 24 March 2020
- [AMBER] GPU support information Serena Vittorio
- [AMBER] cross angle analysis Antonio Amber Carlesso
- [AMBER] MM-PB(GB)/SA error message Antonio Amber Carlesso
- Re: [AMBER] Installation problem for a parallel version of Amber18/AmberTools19 Kosuke Tachibana
- Re: [AMBER] Installation problem for a parallel version of Amber18/AmberTools19 Gustaf Olsson
Wednesday, 25 March 2020
- Re: [AMBER] Installation problem for a parallel version of Amber18/AmberTools19 Kosuke Tachibana
- Re: [AMBER] Installation problem for a parallel version of Amber18/AmberTools19 Kosuke Tachibana
- [AMBER] tleap for Mg2+ data type Sunita Patel
- Re: [AMBER] tleap for Mg2+ data type Stephan Schott
- [AMBER] Writing Trajectories as netcdf files Hunter Wilson
- Re: [AMBER] Writing Trajectories as netcdf files emanuele falbo
- Re: [AMBER] Writing Trajectories as netcdf files Stephan Schott
- [AMBER] parameterization with crystal water Hira Jabeen
- [AMBER] nastruct and modified base pairs Kenneth Huang
- Re: [AMBER] sieve keyword in cpptraj clustering Daniel Roe
- Re: [AMBER] DBscan gives me errors in clustering Daniel Roe
- Re: [AMBER] Writing Trajectories as netcdf files Hunter Wilson
- Re: [AMBER] Clustering analysis Daniel Roe
- Re: [AMBER] Ambmask Error in group input::atommask.f::pop_evalstack stack underflow Daniel Roe
- Re: [AMBER] cross angle analysis Daniel Roe
- Re: [AMBER] nastruct and modified base pairs Daniel Roe
- [AMBER] FATAL Error: Atom does not have a type (Cation) Yoanes Vianney
- Re: [AMBER] FATAL Error: Atom does not have a type (Cation) Thomas Cheatham
- Re: [AMBER] nastruct and modified base pairs Kenneth Huang
- Re: [AMBER] FATAL Error: Atom does not have a type (Cation) Yoanes Vianney
- [AMBER] SImulation prepared using CHARMM GUI terminates with no error at the NTP step Lenka
- Re: [AMBER] tleap for Mg2+ data type Sunita Patel
- [AMBER] residue library for na_link AmberTools19 Gül Zerze
- Re: [AMBER] parameterization with crystal water David A Case
- Re: [AMBER] FATAL Error: Atom does not have a type (Cation) David A Case
- Re: [AMBER] FATAL Error: Atom does not have a type (Cation) David A Case
- Re: [AMBER] tleap for Mg2+ data type David A Case
- Re: [AMBER] SImulation prepared using CHARMM GUI terminates with no error at the NTP step Gustaf Olsson
Thursday, 26 March 2020
- Re: [AMBER] residue library for na_link AmberTools19 David A Case
- [AMBER] Problems with Nvidia Drivers Andrea H. Kasun
- Re: [AMBER] residue library for na_link AmberTools19 Gül Zerze
- Re: [AMBER] nastruct and modified base pairs Daniel Roe
- Re: [AMBER] Problems with Nvidia Drivers Ross Walker
- Re: [AMBER] nastruct and modified base pairs Kenneth Huang
- Re: [AMBER] tleap for Mg2+ data type Sunita Patel
- Re: [AMBER] tleap for Mg2+ data type Sunita Patel
Friday, 27 March 2020
- [AMBER] How to setup a QM/MM calculation in Amber Sadaf Rani
- Re: [AMBER] nastruct and modified base pairs Daniel Roe
- [AMBER] mmpbsa_py_energy failed with prmtop dim_gas.prmtop Azahara.Doncel.uv.es
- [AMBER] Simulations Without Network Garcia, Mauro
- Re: [AMBER] mmpbsa_py_energy failed with prmtop dim_gas.prmtop Ray Luo
- Re: [AMBER] Simulations Without Network David Cerutti
- Re: [AMBER] How to setup a QM/MM calculation in Amber James Kress
- Re: [AMBER] Simulations Without Network Gustaf Olsson
- Re: [AMBER] heme B parameter by mcpb Pengfei Li
- Re: [AMBER] Weird error with antechamber for metal ion / MCPB tutorial Pengfei Li
- Re: [AMBER] problem in MCPB.py Pengfei Li
- Re: [AMBER] KeyError: 'MG' Pengfei Li
- Re: [AMBER] KeyError: 'MG' Pengfei Li
- [AMBER] AmberTools19 update.8 fails to install mark.bergman.uphs.upenn.edu
- Re: [AMBER] "Error of reading the .dat file" in MCPB.py step 2 Pengfei Li
- Re: [AMBER] Simulations Without Network Garcia, Mauro
- Re: [AMBER] How to setup a QM/MM calculation in Amber Sadaf Rani
- Re: [AMBER] How to setup a QM/MM calculation in Amber Goetz, Andreas
- Re: [AMBER] How to setup a QM/MM calculation in Amber Sadaf Rani
- Re: [AMBER] Weird error with antechamber for metal ion / MCPB tutorial Gustavo Seabra
Saturday, 28 March 2020
- Re: [AMBER] Problems with Nvidia Drivers Andrea H. Kasun
- Re: [AMBER] Problems with Nvidia Drivers Ross Walker
- Re: [AMBER] AmberTools19 update.8 fails to install David A Case
- [AMBER] Error while amber installation ankita mehta
- Re: [AMBER] Error while amber installation David A Case
- [AMBER] NPT equilibration is crashing Sunita Patel
- Re: [AMBER] Error while amber installation mirzo
- Re: [AMBER] NPT equilibration is crashing David Sáez
- Re: [AMBER] Error while amber installation ankita mehta
Sunday, 29 March 2020
- Re: [AMBER] NPT equilibration is crashing Carlos Simmerling
- Re: [AMBER] NPT equilibration is crashing Sunita Patel
- Re: [AMBER] Problems with Nvidia Drivers Andrea H. Kasun
- [AMBER] ff19SB + BSC1 + OPC + which ions ? Vlad Cojocaru
- [AMBER] Error: Could not find angle parameter Rosellen, Martin
- Re: [AMBER] ff19SB + BSC1 + OPC + which ions ? David A Case
- Re: [AMBER] Error: Could not find angle parameter David A Case
- [AMBER] checkstructure with cpptraj Nicolas Feldman
- Re: [AMBER] ff19SB + BSC1 + OPC + which ions ? Vlad Cojocaru
- Re: [AMBER] checkstructure with cpptraj Gustaf Olsson
- Re: [AMBER] ff19SB + BSC1 + OPC + which ions ? Christina Bergonzo
- Re: [AMBER] checkstructure with cpptraj Nicolas Feldman
- Re: [AMBER] NPT equilibration is crashing David Sáez
Monday, 30 March 2020
- [AMBER] PDB Modification ankita mehta
- [AMBER] Abasic Site and Leap Polymerization Robert Molt
- Re: [AMBER] Abasic Site and Leap Polymerization Christina Bergonzo
- Re: [AMBER] PDB Modification Osman, Roman
- Re: [AMBER] PDB Modification ankita mehta
- Re: [AMBER] PDB Modification Osman, Roman
- [AMBER] Differences in Lennard-Jones interactions in CPU vs GPU pmemd? Hanne Antila
- [AMBER] MPI+threads in Amber Rohit Zambre
- Re: [AMBER] Abasic Site and Leap Polymerization Robert Molt
- Re: [AMBER] Abasic Site and Leap Polymerization Carlos Simmerling
- Re: [AMBER] Abasic Site and Leap Polymerization Christina Bergonzo
Tuesday, 31 March 2020
- [AMBER] Amber restart simulation SUNITA MUDULI
- Re: [AMBER] Amber restart simulation Carlos Simmerling
- Re: [AMBER] checkstructure with cpptraj Daniel Roe
- Re: [AMBER] MPI+threads in Amber Daniel Roe
- Re: [AMBER] checkstructure with cpptraj Nicolas Feldman
- Re: [AMBER] checkstructure with cpptraj Ahmed Elrashedy
- Re: [AMBER] checkstructure with cpptraj David Sáez
- Re: [AMBER] checkstructure with cpptraj Nicolas Feldman
- Re: [AMBER] checkstructure with cpptraj Nicolas Feldman
- Re: [AMBER] sum of charges from parm file Clorice Reinhardt

Last message date: Tue Mar 31 2020 - 16:00:02 PDT
Archived on: Mon Nov 03 2025 - 05:55:56 PST

Amber Archive Mar 2020 by date