Re: [AMBER] PDB Modification

From: Osman, Roman <roman.osman.mssm.edu>
Date: Mon, 30 Mar 2020 15:30:39 +0000

You can switch the C=O with the N-H.
The force field is the same so you can minimize it and that should do it.

Roman Osman
Sent from my iPhone

> On Mar 30, 2020, at 9:45 AM, ankita mehta <mehtaroadies.gmail.com> wrote:
>
> USE CAUTION: External Message.
>
> Hii all,
> I have a pdb file of say 15 residues.
> I want to invert the sequence of residues i.e. i want (15,14,.........1)
> from N terminal to C terminal.
> without changing the coordinate positions.
> Second i want to invert chirality also , all L- amino acid to D-amino acid
> conversion.
>
> How this can be acccomplished ?
>
> Thanks
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Received on Mon Mar 30 2020 - 09:00:02 PDT