Re: [AMBER] Clustering query

From: Elvis Martis <elvis_bcp.elvismartis.in>
Date: Sun, 22 Mar 2020 23:44:19 +0530

Hello
To the best of my knowledge, if you are using sieve, there are many frames
which are discarded as noise, and hence, not a part of any cluster. So
total frames and fraction in each cluster will never equal the total input
frames and fraction won't be 1.
I hope it helps.
Best Regards



On Sun, 22 Mar 2020 at 23:10, Debarati DasGupta <
debarati_dasgupta.hotmail.com> wrote:

> Hi All
> I have been doing some clustering on my protein trajectories and I have a
> dbscan output here. What I don’t understand is the sum of Frac column
> should that not add up to 1?
>
> [cid:image001.png.01D6009E.6F0AA650]
>
>
> I added up the numbers under Frac header and I got 0.615!
> What happens to the remainder of the frames then??
>
> I m missing out on something?
> Regards
>
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Received on Sun Mar 22 2020 - 11:30:01 PDT
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