Amber Archive Sep 2018: by subject

[AMBER] 4.5 fold increase in memory consumption for nmr restraints going from amber14 to amber16
- Paul Westphälinger (Wed Sep 26 2018 - 04:10:04 PDT)
- James Kress (Tue Sep 25 2018 - 09:49:54 PDT)
- Paul Westphälinger (Tue Sep 25 2018 - 03:43:55 PDT)
[AMBER] A confusion about the binding energy calculated by pbsa with implicit membrane model
- 高振梅 (Fri Sep 14 2018 - 06:25:56 PDT)
- Ray Luo (Wed Sep 12 2018 - 10:35:32 PDT)
- 高振梅 (Wed Sep 12 2018 - 06:15:50 PDT)
[AMBER] A error about Minimize structure and calc entropy IN MM_PBSA.PL
- 龚乾坤 (Tue Sep 11 2018 - 23:59:41 PDT)
- 龚乾坤 (Tue Sep 11 2018 - 18:06:48 PDT)
- David A Case (Tue Sep 11 2018 - 09:11:25 PDT)
- 龚乾坤 (Tue Sep 11 2018 - 05:26:36 PDT)
[AMBER] a error about MMPBSA.PY
- David A Case (Fri Sep 14 2018 - 05:40:24 PDT)
- 龚乾坤 (Thu Sep 13 2018 - 17:29:07 PDT)
[AMBER] Adding 12_6_4 LJ parameters in prmtop file
- Pengfei Li (Sat Sep 22 2018 - 07:42:55 PDT)
- Pengfei Li (Sat Sep 22 2018 - 07:41:42 PDT)
- Deepika Sardana (Sun Sep 16 2018 - 09:33:18 PDT)
[AMBER] AMBER Alanine tutorial (different outputs from AMBER15 and AMBER18)
- Matias Machado (Sun Sep 16 2018 - 13:18:29 PDT)
- leifepeterson.sbcglobal.net (Sun Sep 16 2018 - 12:30:24 PDT)
[AMBER] Amber constraint SMD
- 李耀 (Wed Sep 12 2018 - 08:17:30 PDT)
[AMBER] Amber Installation Error
- David Case (Tue Sep 18 2018 - 06:21:49 PDT)
- Yuthika Dholey (Mon Sep 17 2018 - 22:46:02 PDT)
[AMBER] AMBER ntslim limit
- Matias Machado (Fri Sep 21 2018 - 05:06:16 PDT)
- Bill Ross (Fri Sep 21 2018 - 02:46:10 PDT)
- Nikolay N. Kuzmich (Fri Sep 21 2018 - 02:34:30 PDT)
[AMBER] Amber on GPU
- emanuele falbo (Thu Sep 20 2018 - 04:23:04 PDT)
- David A Case (Thu Sep 20 2018 - 04:14:54 PDT)
- emanuele falbo (Thu Sep 20 2018 - 03:13:40 PDT)
[AMBER] Amber16 cuda compiling error
- David Case (Tue Sep 18 2018 - 06:18:54 PDT)
- David Cerutti (Mon Sep 17 2018 - 21:33:00 PDT)
- senal dinuka (Mon Sep 17 2018 - 21:13:58 PDT)
- David Cerutti (Mon Sep 17 2018 - 20:47:11 PDT)
- senal dinuka (Mon Sep 17 2018 - 20:43:19 PDT)
[AMBER] annoying elapsed time in mdout of amber18
- Song-Ho Chong (Fri Sep 28 2018 - 09:23:26 PDT)
- James Kress (Fri Sep 28 2018 - 09:18:53 PDT)
- Song-Ho Chong (Fri Sep 28 2018 - 00:15:24 PDT)
- Song-Ho Chong (Thu Sep 27 2018 - 20:38:57 PDT)
- David Case (Thu Sep 27 2018 - 13:36:36 PDT)
- Song-Ho Chong (Thu Sep 27 2018 - 05:57:00 PDT)
[AMBER] Arsenous acid (H3AsO3) parameterization
- Pengfei Li (Sat Sep 08 2018 - 12:10:41 PDT)
[AMBER] atomic fluctuation vs residue
- Daniel Roe (Thu Sep 20 2018 - 07:42:08 PDT)
- Avirup Ghosh (Tue Sep 18 2018 - 19:26:19 PDT)
[AMBER] Au+++ ion parameter
- Pengfei Li (Sat Sep 08 2018 - 12:49:12 PDT)
- Pengfei Li (Sat Sep 08 2018 - 12:18:52 PDT)
[AMBER] Calculating residence times with cpptraj
- Daniel Roe (Wed Sep 26 2018 - 12:08:57 PDT)
- Stefan Ivanov (Tue Sep 25 2018 - 21:52:54 PDT)
[AMBER] Clustering_distance_metric_option_general_rule
- Antonio Amber Carlesso (Thu Sep 27 2018 - 14:07:15 PDT)
- Christina Bergonzo (Thu Sep 20 2018 - 08:47:55 PDT)
- Daniel Roe (Thu Sep 20 2018 - 08:21:26 PDT)
- Antonio Amber Carlesso (Sun Sep 16 2018 - 01:26:25 PDT)
[AMBER] Compression of CDF coordinate files to gzip AMBER18.
- David A Case (Thu Sep 13 2018 - 04:39:00 PDT)
- DHEERAJ CHITARA (Thu Sep 13 2018 - 01:12:44 PDT)
[AMBER] Constant pH and Redox Potential MD tutorial
- Cruzeiro,Vinicius Wilian D (Sat Sep 01 2018 - 05:41:44 PDT)
[AMBER] Constant velocity pulling in SMD
- M RCC (Fri Aug 31 2018 - 23:49:50 PDT)
[AMBER] Contact Map
- Daniel Roe (Mon Sep 24 2018 - 08:48:33 PDT)
- Daniel Roe (Mon Sep 24 2018 - 08:46:58 PDT)
- Sourav Purohit (Thu Sep 20 2018 - 11:24:01 PDT)
- Daniel Roe (Thu Sep 20 2018 - 06:00:58 PDT)
- Sourav Purohit (Mon Sep 17 2018 - 15:59:06 PDT)
[AMBER] Coordinate messed up after tleap set box
- Simon Kit Sang Chu (Tue Sep 04 2018 - 11:39:48 PDT)
- David A Case (Tue Sep 04 2018 - 10:37:20 PDT)
- Simon Kit Sang Chu (Tue Sep 04 2018 - 09:58:33 PDT)
- David A Case (Tue Sep 04 2018 - 05:28:36 PDT)
- Simon Kit Sang Chu (Mon Sep 03 2018 - 12:31:32 PDT)
[AMBER] Couldn't find VdW parameters
- Sushi Shilpa (Fri Sep 07 2018 - 01:51:10 PDT)
- Jason Swails (Thu Sep 06 2018 - 05:56:23 PDT)
- Sushi Shilpa (Thu Sep 06 2018 - 05:20:02 PDT)
[AMBER] Counter Ions in X-Ray structure.
- David Case (Thu Sep 27 2018 - 13:29:38 PDT)
- Matias Machado (Thu Sep 27 2018 - 10:25:17 PDT)
- Matias Machado (Thu Sep 27 2018 - 09:24:24 PDT)
- Keiran Corbett (Thu Sep 27 2018 - 07:38:52 PDT)
- Keiran Corbett (Thu Sep 27 2018 - 07:08:27 PDT)
- David Case (Thu Sep 27 2018 - 05:53:16 PDT)
- Keiran Corbett (Thu Sep 27 2018 - 04:55:35 PDT)
[AMBER] covalently bonded ligand
- Pengfei Li (Sat Sep 08 2018 - 11:30:14 PDT)
- hosein geraili (Wed Sep 05 2018 - 05:40:54 PDT)
[AMBER] cpptraj segmentation fault when using avgout in cluster
- Charo del Genio (Mon Sep 03 2018 - 07:07:27 PDT)
[AMBER] CPPTRAJ: extracting the restraining forces
- Daniel Roe (Thu Sep 20 2018 - 08:45:32 PDT)
- Nikolay N. Kuzmich (Wed Sep 12 2018 - 06:02:47 PDT)
[AMBER] Critical Isoform selectivity in MD
- David Case (Thu Sep 27 2018 - 04:46:52 PDT)
- M RCC (Sun Sep 23 2018 - 23:15:49 PDT)
[AMBER] cuda 10 support
- David Cerutti (Fri Sep 21 2018 - 08:41:57 PDT)
- Waqas Takkar (Fri Sep 21 2018 - 03:42:04 PDT)
[AMBER] CUDA and driver version for Nvidia Titan Black and Titan Z GPUs cluster
- Ross Walker (Mon Sep 10 2018 - 15:12:49 PDT)
- Ryan Novosielski (Mon Sep 10 2018 - 13:33:09 PDT)
- David A Case (Mon Sep 10 2018 - 08:20:55 PDT)
- Markowska (Fri Sep 07 2018 - 11:17:42 PDT)
- David Cerutti (Fri Sep 07 2018 - 10:46:41 PDT)
- Markowska (Fri Sep 07 2018 - 10:37:06 PDT)
[AMBER] difference of distances using cpptraj in free energy plot
- Nisha Amarnath Jonniya (Thu Sep 13 2018 - 00:34:53 PDT)
- Daniel Roe (Wed Sep 12 2018 - 10:55:23 PDT)
- Nisha Amarnath Jonniya (Wed Sep 12 2018 - 05:07:10 PDT)
[AMBER] Distance based energy calculation
- Daniel Roe (Thu Sep 20 2018 - 08:13:41 PDT)
- MOHD HOMAIDUR RAHMAN (Thu Sep 13 2018 - 06:45:52 PDT)
[AMBER] Distance HH TIP3P
- David A Case (Mon Sep 03 2018 - 04:47:40 PDT)
[AMBER] Energy uints in mden file and mdout_analyzer.py
- Meng Wu (Fri Sep 07 2018 - 20:42:52 PDT)
- Meng Wu (Thu Sep 06 2018 - 19:14:59 PDT)
- David A Case (Thu Sep 06 2018 - 11:59:39 PDT)
- Meng Wu (Thu Sep 06 2018 - 06:17:41 PDT)
[AMBER] Error in umbrella sampling
- Saikat Pal (Tue Sep 18 2018 - 07:30:02 PDT)
- Saikat Pal (Mon Sep 17 2018 - 10:23:41 PDT)
- David A Case (Mon Sep 17 2018 - 10:10:20 PDT)
- Saikat Pal (Mon Sep 17 2018 - 08:50:53 PDT)
- Bill Ross (Fri Sep 14 2018 - 09:47:11 PDT)
- Saikat Pal (Fri Sep 14 2018 - 07:26:14 PDT)
[AMBER] Error while creating topology file(HMassRepartition) in parmed
- David Case (Mon Sep 24 2018 - 16:11:47 PDT)
- David A Case (Mon Sep 24 2018 - 04:42:28 PDT)
- David A Case (Mon Sep 24 2018 - 04:39:26 PDT)
- Aravind Ravichandran (Mon Sep 24 2018 - 03:39:09 PDT)
[AMBER] Format of cpptraj pairwise distance file when clustering
- Daniel Roe (Tue Sep 04 2018 - 12:26:16 PDT)
- Daniel Roe (Tue Sep 04 2018 - 08:02:53 PDT)
- Charo del Genio (Tue Sep 04 2018 - 01:00:48 PDT)
- Daniel Roe (Mon Sep 03 2018 - 11:49:34 PDT)
- Charo del Genio (Mon Sep 03 2018 - 07:18:02 PDT)
[AMBER] Fwd: Distance based energy calculation
- MOHD HOMAIDUR RAHMAN (Tue Sep 18 2018 - 23:32:03 PDT)
[AMBER] Fwd: Problem with energy minimization sander.MPI
- maryam azimzadehirani (Wed Sep 05 2018 - 07:03:20 PDT)
- David A Case (Wed Sep 05 2018 - 05:10:03 PDT)
- maryam azimzadehirani (Wed Sep 05 2018 - 02:34:17 PDT)
- Bill Ross (Wed Sep 05 2018 - 02:03:25 PDT)
- maryam azimzadehirani (Wed Sep 05 2018 - 01:54:14 PDT)
[AMBER] GTX-2080 benchmarks
- David Cerutti (Tue Sep 04 2018 - 10:24:06 PDT)
- Piotr Fajer (Tue Sep 04 2018 - 10:04:49 PDT)
[AMBER] H-bond between the substrate molecule and protein in the MD traj
- Daniel Roe (Thu Sep 13 2018 - 06:09:18 PDT)
- Gustaf Olsson (Wed Sep 12 2018 - 23:16:14 PDT)
- Meng Wu (Wed Sep 12 2018 - 18:30:49 PDT)
[AMBER] Help in COM pulling
- M RCC (Sun Sep 02 2018 - 09:25:52 PDT)
[AMBER] How to calculate Coordination number from RDF Profile using CPPTRAJ ?
- Bharat Manna (Thu Sep 20 2018 - 20:30:19 PDT)
- Matias Machado (Sun Sep 16 2018 - 07:50:47 PDT)
- Bharat Manna (Thu Sep 13 2018 - 11:48:48 PDT)
[AMBER] How to computing peptide partial charges with antechamber?
- David Case (Sat Sep 29 2018 - 10:54:01 PDT)
- yulongsun.nwpu.edu.cn (Sat Sep 29 2018 - 06:59:53 PDT)
[AMBER] Installing fortran in Ubuntu-64 for Sander
- Dwight McGee (Sat Sep 15 2018 - 17:35:31 PDT)
- leifepeterson.sbcglobal.net (Sat Sep 15 2018 - 13:03:50 PDT)
[AMBER] KDE analysis, (P) greater than one
- Jason Swails (Wed Sep 05 2018 - 20:49:34 PDT)
- Mac Kevin Braza (Mon Sep 03 2018 - 18:25:25 PDT)
- Adrian Roitberg (Mon Sep 03 2018 - 06:34:24 PDT)
- Daniel Roe (Sat Sep 01 2018 - 05:48:25 PDT)
- Mac Kevin Braza (Fri Aug 31 2018 - 20:24:19 PDT)
[AMBER] Leap: Nuleotides addition
- David A Case (Sat Sep 08 2018 - 07:31:39 PDT)
- Aravind Ravichandran (Sat Sep 08 2018 - 04:32:36 PDT)
[AMBER] MCPB.py error (not reading chk file)
- Pengfei Li (Sat Sep 08 2018 - 11:38:13 PDT)
- Sushi Shilpa (Thu Sep 06 2018 - 01:58:22 PDT)
[AMBER] metalParm2.xml or metalParm.xml
- Pengfei Li (Sat Sep 08 2018 - 11:46:38 PDT)
[AMBER] more about gfortran8.2 and clang9.1: no cpptraj problems here
- Bill Ross (Wed Sep 12 2018 - 13:38:55 PDT)
- Bill Ross (Wed Sep 12 2018 - 13:35:08 PDT)
- David A Case (Wed Sep 12 2018 - 13:28:34 PDT)
[AMBER] NCSU_SMD for protein-ligand complex pulling
- M RCC (Sat Sep 01 2018 - 03:25:20 PDT)
[AMBER] Need help regarding calculation of Coordination number from RDF Profile
- Bharat Manna (Tue Sep 04 2018 - 06:35:59 PDT)
[AMBER] Newbie question about installing AmberTool18 in Linux (VirtualBox)
- Hai Nguyen (Sun Sep 16 2018 - 15:00:46 PDT)
- leifepeterson.sbcglobal.net (Sat Sep 15 2018 - 09:28:16 PDT)
[AMBER] Normal mode calculation on a truncated system
- David A Case (Mon Sep 03 2018 - 04:46:07 PDT)
[AMBER] NVIDIA GPU RTX 2080 / RTX 2080 Ti
- David Cerutti (Thu Sep 27 2018 - 10:18:50 PDT)
- Alain Chaumont (Thu Sep 27 2018 - 09:55:11 PDT)
[AMBER] nVidia Webinar: Achievable Free Energy Calculations through GPU-Accelerated AMBER
- accuratefreeenergy.gmail.com (Mon Sep 24 2018 - 10:28:14 PDT)
[AMBER] Options for nonpolar solvation free energy calculation with mm_pbsa.pl
- David A Case (Mon Sep 24 2018 - 04:32:26 PDT)
- 龚乾坤 (Sun Sep 16 2018 - 19:50:56 PDT)
[AMBER] parameterizing the covalently bonded ligand
- hosein geraili (Mon Sep 03 2018 - 09:25:24 PDT)
[AMBER] Parameters for non-standard residues
- Anuja Ware (Mon Sep 03 2018 - 04:10:19 PDT)
[AMBER] parmed pdb to crd
- Jason Swails (Fri Sep 07 2018 - 20:09:32 PDT)
- Neha Gandhi (Fri Sep 07 2018 - 02:04:34 PDT)
[AMBER] PBC error. Amber force field in NAMD
- Eric Lang (Tue Sep 25 2018 - 06:34:28 PDT)
- M RCC (Tue Sep 25 2018 - 04:34:54 PDT)
[AMBER] pbsa:cannot match namelist object name mprob
- Ray Luo (Mon Sep 17 2018 - 10:15:21 PDT)
- 高振梅 (Mon Sep 17 2018 - 07:00:46 PDT)
[AMBER] Problem in testing the Zinc enzyme example using MCPB.py
- Pengfei Li (Sat Sep 22 2018 - 07:31:16 PDT)
- Alex Schwartz (Tue Sep 18 2018 - 20:55:07 PDT)
[AMBER] Problem with antechamber/acdoctor
- Sarah Fegan - UKRI STFC (Wed Sep 26 2018 - 03:15:11 PDT)
[AMBER] Problem with stripping with a condition
- Daniel Roe (Thu Sep 20 2018 - 05:49:44 PDT)
- Hadi Rahmaninejad (Wed Sep 19 2018 - 08:56:43 PDT)
[AMBER] Problems with MPI compilation gb_force.F90
- James Kress (Fri Sep 28 2018 - 09:16:49 PDT)
- David Case (Fri Sep 28 2018 - 04:28:31 PDT)
- Ruben Ramos Horta (Fri Sep 28 2018 - 01:05:10 PDT)
[AMBER] Protein "jumping" during SMD run
- Carlos Simmerling (Fri Sep 14 2018 - 13:32:53 PDT)
- Cory Ayres (Fri Sep 14 2018 - 08:13:16 PDT)
[AMBER] QM/MM Thermodynamic Integration
- Goetz, Andreas (Thu Sep 20 2018 - 09:50:57 PDT)
- emanuele falbo (Thu Sep 20 2018 - 04:29:22 PDT)
[AMBER] Query for umbrella sampling
- Bill Ross (Wed Sep 12 2018 - 13:41:32 PDT)
- Saikat Pal (Wed Sep 12 2018 - 13:36:57 PDT)
- Saikat Pal (Wed Sep 12 2018 - 00:09:01 PDT)
[AMBER] Query on 2DRMSD
- Thomas Cheatham (Fri Sep 21 2018 - 17:09:41 PDT)
- Saikat Pal (Fri Sep 21 2018 - 05:03:09 PDT)
[AMBER] Query regarding the number of cores for running sander.MPI
- Stephan Schott (Fri Sep 14 2018 - 01:43:18 PDT)
- Leena Aggarwal (Fri Sep 14 2018 - 01:25:42 PDT)
[AMBER] Question about Amber.
- Asier Zorrilla (Fri Sep 21 2018 - 05:00:42 PDT)
- Bill Ross (Mon Sep 17 2018 - 01:40:01 PDT)
- Asier Zorrilla (Mon Sep 17 2018 - 01:25:00 PDT)
- David A Case (Fri Sep 14 2018 - 05:53:49 PDT)
- Adrian Roitberg (Fri Sep 14 2018 - 05:39:51 PDT)
- Carlos Simmerling (Fri Sep 14 2018 - 05:17:15 PDT)
- Asier Zorrilla (Fri Sep 14 2018 - 05:08:37 PDT)
[AMBER] Question about configure Ambertool18 on Mac
- David A Case (Wed Sep 12 2018 - 05:08:42 PDT)
- Bill Ross (Wed Sep 12 2018 - 01:06:26 PDT)
- tang.xiaping.outlook.com (Wed Sep 12 2018 - 00:50:49 PDT)
- Bill Ross (Wed Sep 12 2018 - 00:38:43 PDT)
- tang.xiaping.outlook.com (Wed Sep 12 2018 - 00:29:08 PDT)
- Bill Ross (Tue Sep 11 2018 - 22:46:11 PDT)
- tang.xiaping.outlook.com (Tue Sep 11 2018 - 22:35:25 PDT)
[AMBER] rdf in one dimmension
- Tom Kurtzman (Mon Sep 17 2018 - 19:49:35 PDT)
- Daniel Roe (Mon Sep 17 2018 - 04:22:57 PDT)
- Hadi Rahmaninejad (Sun Sep 16 2018 - 17:32:30 PDT)
- Tom Kurtzman (Fri Sep 14 2018 - 18:48:20 PDT)
- Tom Kurtzman (Fri Sep 14 2018 - 18:36:17 PDT)
- Hadi Rahmaninejad (Fri Sep 14 2018 - 13:29:25 PDT)
[AMBER] Re-scaling masses and kinetic energy in TI calculations
- Tom Kurtzman (Thu Sep 27 2018 - 05:29:51 PDT)
- David Case (Thu Sep 27 2018 - 04:42:42 PDT)
[AMBER] Reducing memory usage in lifetime analyses
- Gustaf Olsson (Fri Sep 28 2018 - 00:20:42 PDT)
- Daniel Roe (Wed Sep 26 2018 - 12:14:10 PDT)
- Gustaf Olsson (Tue Sep 25 2018 - 23:15:29 PDT)
[AMBER] Reg: antechamber net charge calculation -nc
- David A Case (Tue Sep 04 2018 - 10:46:58 PDT)
- Samdani A (Tue Sep 04 2018 - 07:22:40 PDT)
[AMBER] Regarding error in MCPB.py
- Pengfei Li (Tue Sep 04 2018 - 07:12:38 PDT)
- dhaval patel (Sun Sep 02 2018 - 02:18:23 PDT)
[AMBER] Regarding nastruct command in cpptraj
- Rajarshi Roy (Fri Sep 21 2018 - 22:01:54 PDT)
- Daniel Roe (Fri Sep 21 2018 - 09:09:47 PDT)
- Rajarshi Roy (Fri Sep 21 2018 - 00:35:42 PDT)
- Daniel Roe (Thu Sep 20 2018 - 07:40:39 PDT)
- Rajarshi Roy (Tue Sep 18 2018 - 10:39:41 PDT)
[AMBER] Regarding output file in REMD
- Rajarshi Roy (Mon Sep 03 2018 - 21:47:10 PDT)
[AMBER] Residue mutation and side chains
- Carlos Simmerling (Thu Sep 13 2018 - 08:41:48 PDT)
- Bill Ross (Thu Sep 13 2018 - 00:23:03 PDT)
- Benjamin Clausen (Thu Sep 13 2018 - 00:15:57 PDT)
- Carlos Simmerling (Wed Sep 12 2018 - 09:25:16 PDT)
- Benjamin Clausen (Wed Sep 12 2018 - 04:01:50 PDT)
[AMBER] RESOLVED: AMBER Alanine tutorial (need to replace .mdcrd with .nc)
- leifepeterson.sbcglobal.net (Mon Sep 17 2018 - 06:36:34 PDT)
[AMBER] RESOLVED: Installing fortran in Ubuntu-64 for Sander
- leifepeterson.sbcglobal.net (Sat Sep 15 2018 - 19:15:25 PDT)
[AMBER] RESOLVED: peek_ewald_inpcrd: Box info not found in inpcrd
- Matias Machado (Sun Sep 16 2018 - 08:35:10 PDT)
- leifepeterson.sbcglobal.net (Sat Sep 15 2018 - 20:24:35 PDT)
[AMBER] Restraining forces for atoms
- Bill Ross (Thu Sep 06 2018 - 09:07:23 PDT)
- Nikolay N. Kuzmich (Thu Sep 06 2018 - 05:46:42 PDT)
- Bill Ross (Wed Sep 05 2018 - 01:17:52 PDT)
- Nikolay N. Kuzmich (Wed Sep 05 2018 - 01:06:12 PDT)
[AMBER] RMS is zero
- Hadi Rahmaninejad (Tue Sep 04 2018 - 14:19:08 PDT)
- Stephan Schott (Tue Sep 04 2018 - 13:58:04 PDT)
- Hadi Rahmaninejad (Tue Sep 04 2018 - 13:34:23 PDT)
[AMBER] RMS rotate about z-axis only
- Daniel Roe (Thu Sep 20 2018 - 08:25:03 PDT)
- Hai Nguyen (Fri Sep 14 2018 - 08:07:01 PDT)
- Wesley Michael Botello-Smith (Tue Sep 11 2018 - 13:02:49 PDT)
[AMBER] Running GIST calculation in parallel
- Matias Machado (Sun Sep 23 2018 - 06:08:22 PDT)
- Tom Kurtzman (Fri Sep 21 2018 - 15:35:32 PDT)
- Matias Machado (Fri Sep 21 2018 - 11:16:07 PDT)
- Daniel Roe (Fri Sep 21 2018 - 10:18:41 PDT)
- M RCC (Fri Sep 21 2018 - 07:53:03 PDT)
- Daniel Roe (Thu Sep 20 2018 - 08:37:37 PDT)
- M RCC (Thu Sep 20 2018 - 02:57:44 PDT)
[AMBER] Sander 01_Min.out error
- leifepeterson.sbcglobal.net (Sat Sep 15 2018 - 19:23:44 PDT)
[AMBER] Seeking clarification regarding Calculation of Linear Interaction Energy (lie)
- Bharat Manna (Thu Sep 20 2018 - 20:25:51 PDT)
[AMBER] setting of different concentration of Nacl
- Stephan Schott (Fri Sep 21 2018 - 08:13:31 PDT)
- Matias Machado (Fri Sep 21 2018 - 07:58:16 PDT)
- Stephan Schott (Fri Sep 21 2018 - 07:49:30 PDT)
- Matias Machado (Fri Sep 21 2018 - 07:10:30 PDT)
- Nisha Amarnath Jonniya (Fri Sep 21 2018 - 05:40:52 PDT)
[AMBER] SMD free energy inferred from work
- Ruth Helena Tichauer (Mon Sep 24 2018 - 13:16:10 PDT)
- Feng Pan (Mon Sep 24 2018 - 08:38:09 PDT)
- Ruth Helena Tichauer (Mon Sep 24 2018 - 06:46:42 PDT)
[AMBER] Some questions about mmpbsa.py
- David A Case (Thu Sep 13 2018 - 04:32:04 PDT)
- 龚乾坤 (Thu Sep 13 2018 - 00:01:12 PDT)
[AMBER] Subtracting the forces from harmonic restraints
- Nikolay N. Kuzmich (Mon Sep 03 2018 - 01:52:57 PDT)
[AMBER] Temperature calculaton by CPPTRAJ
- Ikuo KURISAKI (Mon Sep 03 2018 - 06:38:34 PDT)
- Daniel Roe (Sat Sep 01 2018 - 05:46:25 PDT)
- Ikuo KURISAKI (Sat Sep 01 2018 - 03:32:08 PDT)
- Ikuo KURISAKI (Sat Sep 01 2018 - 01:34:48 PDT)
[AMBER] Temperature RMS, ntslim limit
- Matias Machado (Thu Sep 20 2018 - 07:48:35 PDT)
- Nikolay N. Kuzmich (Thu Sep 20 2018 - 05:29:24 PDT)
[AMBER] test errors of amber18
- David Case (Thu Sep 27 2018 - 04:51:59 PDT)
- Lei Zhao (Mon Sep 17 2018 - 06:41:34 PDT)
[AMBER] Umbrella sampling scripts
- emanuele falbo (Thu Sep 27 2018 - 11:43:50 PDT)
- Marcos Serrou do Amaral (Thu Sep 27 2018 - 07:54:03 PDT)
- emanuele falbo (Thu Sep 27 2018 - 07:14:28 PDT)
- emanuele falbo (Thu Sep 27 2018 - 06:56:58 PDT)
- Marcos Serrou do Amaral (Thu Sep 27 2018 - 06:51:27 PDT)
- emanuele falbo (Thu Sep 27 2018 - 06:33:59 PDT)
[AMBER] Unknown keyword
- Bill Ross (Wed Sep 19 2018 - 03:04:48 PDT)
- Sushi Shilpa (Wed Sep 19 2018 - 02:55:54 PDT)
[AMBER] unwrap problem in the liquid water dynamics trajectory analysis
- Daniel Roe (Mon Sep 17 2018 - 04:21:51 PDT)
- jinfeng liu (Sun Sep 16 2018 - 18:47:44 PDT)
- jinfeng liu (Sun Sep 16 2018 - 18:21:31 PDT)
- David A Case (Sun Sep 16 2018 - 17:59:18 PDT)
- Matias Machado (Sun Sep 16 2018 - 07:04:09 PDT)
- Matias Machado (Sun Sep 16 2018 - 06:52:54 PDT)
- jinfeng liu (Sat Sep 15 2018 - 22:43:13 PDT)
[AMBER] why not free QM software？
- Gustavo Seabra (Sun Sep 16 2018 - 12:33:38 PDT)
- Albert (Sun Sep 16 2018 - 12:23:19 PDT)
- Gustavo Seabra (Sun Sep 16 2018 - 11:49:33 PDT)
- Charles-Alexandre Mattelaer (Sat Sep 15 2018 - 07:47:41 PDT)
- Albert (Sat Sep 15 2018 - 07:42:01 PDT)
Coordinate messed up after tleap set box]
- David A Case (Tue Sep 04 2018 - 05:31:36 PDT)

Amber Archive Sep 2018 by subject