My bad! I had forgotten about the CUDA installation dependencies. I think
I've hit this issue with GNU compilers myself. What you can do is install
5.4 and change your links to point there, then run the installation with
CUDA 9.1. You still shouldn't have to downgrade your Ubuntu.
Dave
On Tue, Sep 18, 2018 at 12:14 AM senal dinuka <senal.ichemc.edu.lk> wrote:
> Dear David,
> As I have included my gcc, g++ and gfortran versions are
> of 7.x . But my error interpret that I require compiler version lower than
> 5.0
>
> On Tue, Sep 18, 2018 at 9:17 AM David Cerutti <dscerutti.gmail.com> wrote:
>
> > You need to upgrade your gnu compilers. Make sure to upgrade all of gcc,
> > g++, and gfortran. Furthermore, make sure all of your environment
> > variables are pointing towards the same compilers of consistent versions
> > greater than or equal to 5.4. You do NOT need to downgrade
> Ubuntu--upgrade
> > your GNU.
> >
> > Dave
> >
> >
> > On Mon, Sep 17, 2018 at 11:43 PM senal dinuka <senal.ichemc.edu.lk>
> wrote:
> >
> > > Dear Amber users,
> > > I have accidentally upgraded my Ubuntu desktop to version 18 which
> > results
> > > in amber MPI and CUDA versions at halt. I was able to successfully
> > > recompile MPI version even though CUDA version resulted in following
> > error.
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > > *In file included from
> > > /usr/local/cuda/bin/..//include/cuda_runtime.h:78:0,
> from
> > > <command-line>:0:/usr/local/cuda/bin/..//include/host_config.h:119:2:
> > > error: #error -- unsupported GNU version! gcc versions later than 5 are
> > not
> > > supported! #error -- unsupported GNU version! gcc versions later than 5
> > are
> > > not supported! ^~~~~Makefile:175: recipe for target
> 'cuda_cg_wrapper.o'
> > > failedmake[2]: *** [cuda_cg_wrapper.o] Error 1make[2]: Leaving
> directory
> > > '/home/senal-research/amber16/AmberTools/src/pbsa'Makefile:447: recipe
> > for
> > > target 'cuda_serial' failedmake[1]: *** [cuda_serial] Error 2make[1]:
> > > Leaving directory
> > '/home/senal-research/amber16/AmberTools/src'Makefile:7:
> > > recipe for target 'install' failedmake: *** [install] Error 2*
> > >
> > > Following are the outputs for gcc --version , nvcc --version and
> > nvidia-smi
> > > commands.
> > >
> > >
> > >
> > >
> > > *gcc (Ubuntu 7.3.0-16ubuntu3) 7.3.0Copyright (C) 2017 Free Software
> > > Foundation, Inc.This is free software; see the source for copying
> > > conditions. There is NOwarranty; not even for MERCHANTABILITY or
> FITNESS
> > > FOR A PARTICULAR PURPOSE.*
> > >
> > >
> > >
> > >
> > >
> > > *senal-research.crlc-xeon:~$ nvcc --versionnvcc: NVIDIA (R) Cuda
> > compiler
> > > driverCopyright (c) 2005-2017 NVIDIA CorporationBuilt on
> > > Fri_Nov__3_21:07:56_CDT_2017Cuda compilation tools, release 9.1,
> V9.1.85*
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > > *senal-research.crlc-xeon:~$ nvidia-smi Tue Sep 18 09:08:51 2018
> > >
> > >
> >
> +-----------------------------------------------------------------------------+|
> > > NVIDIA-SMI 390.87 Driver Version: 390.87
> > >
> > >
> >
> ||-------------------------------+----------------------+----------------------+|
> > > GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr.
> > ECC
> > > || Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util
> > Compute
> > > M.
> > >
> > >
> >
> ||===============================+======================+======================||
> > > 0 GeForce GTX 108... Off | 00000000:03:00.0 On |
> N/A
> > > || 0% 49C P8 15W / 250W | 534MiB / 11177MiB | 0%
> > > Default
> > >
> > >
> >
> |+-------------------------------+----------------------+----------------------+
> > >
> > >
> >
> +-----------------------------------------------------------------------------+|
> > > Processes: GPU
> > Memory
> > > || GPU PID Type Process name
> > > Usage
> > >
> > >
> >
> ||=============================================================================||
> > > 0 3356 G /usr/lib/xorg/Xorg
> 26MiB
> > > || 0 3440 G /usr/bin/gnome-shell
> > > 50MiB || 0 3794 G
> > > /usr/lib/xorg/Xorg 212MiB || 0 3873
> > > G 2MiB || 0
> > > 4027 G /usr/bin/gnome-shell 162MiB ||
> > > 0 12625 G ...al-research/spartan16.2_x86-64/sp_gui_r
> 77MiB
> > >
> > >
> >
> |+-----------------------------------------------------------------------------+*
> > >
> > > I would like for a possible solution before I downgrade my Ubuntu
> > version.
> > >
> > > Regards,
> > > --
> > > D L Senal Dinuka
> > > Grad.Chem., A.I.Chem.C.
> > > Research Assistant
> > > College of Chemical Sciences
> > > Institute of Chemistry Ceylon
> > > Rajagiriya
> > > Sri Lanka
> > > +94 77 627 4678
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
> --
> D L Senal Dinuka
> Grad.Chem., A.I.Chem.C.
> Research Assistant
> College of Chemical Sciences
> Institute of Chemistry Ceylon
> Rajagiriya
> Sri Lanka
> +94 77 627 4678
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Sep 17 2018 - 22:00:02 PDT
