Amber Archive Sep 2018: by messages with attachments

Re: [AMBER] KDE analysis, (P) greater than one Mac Kevin Braza (Mon Sep 03 2018 - 18:25:25 PDT)
1. KDE_sample.png (7731 bytes)
[AMBER] Regarding output file in REMD Rajarshi Roy (Mon Sep 03 2018 - 21:47:10 PDT)
1. 09-04_10-16-22.png (103424 bytes)
2. 09-04_10-16-12.png (139600 bytes)
Re: [AMBER] Need help regarding calculation of Coordination number from RDF Profile Bharat Manna (Tue Sep 04 2018 - 06:35:59 PDT)
1. rdf.txt (3300 bytes)
2. intrdf.txt (4800 bytes)
Re: [AMBER] Coordinate messed up after tleap set box Simon Kit Sang Chu (Tue Sep 04 2018 - 09:58:33 PDT)
1. present.pdb (485511 bytes)
Re: [AMBER] Fwd: Problem with energy minimization sander.MPI maryam azimzadehirani (Wed Sep 05 2018 - 02:34:17 PDT)
1. min1.out (4102 bytes)
Re: [AMBER] Energy uints in mden file and mdout_analyzer.py Meng Wu (Thu Sep 06 2018 - 19:14:59 PDT)
1. Figure4.png (239151 bytes)
Re: [AMBER] Energy uints in mden file and mdout_analyzer.py Meng Wu (Fri Sep 07 2018 - 20:42:52 PDT)
1. Figure4.png (239151 bytes)
[AMBER] How to calculate Coordination number from RDF Profile using CPPTRAJ ? Bharat Manna (Thu Sep 13 2018 - 11:48:48 PDT)
1. intrdf.txt (4832 bytes)
2. rdf.png (97772 bytes)
3. rdf_profile.agr (3300 bytes)
[AMBER] A confusion about the binding energy calculated by pbsa with implicit membrane model 高振梅 (Fri Sep 14 2018 - 06:25:56 PDT)
1. z.png (13628 bytes)
[AMBER] Protein "jumping" during SMD run Cory Ayres (Fri Sep 14 2018 - 08:13:16 PDT)
1. NewSimulation_NoAccess.PNG (44714 bytes)
2. OriginalSimulation_Three_Access.PNG (38814 bytes)
Re: [AMBER] unwrap problem in the liquid water dynamics trajectory analysis jinfeng liu (Sun Sep 16 2018 - 18:21:31 PDT)
1. diffusion.jpg (19205 bytes)
[AMBER] Options for nonpolar solvation free energy calculation with mm_pbsa.pl 龚乾坤 (Sun Sep 16 2018 - 19:50:56 PDT)
1. 1537152575825.png (58701 bytes)
[AMBER] test errors of amber18 Lei Zhao (Mon Sep 17 2018 - 06:41:34 PDT)
1. 09-15_16-03-57.diff.zip (177253 bytes)
[AMBER] Unknown keyword Sushi Shilpa (Wed Sep 19 2018 - 02:55:54 PDT)
1. ArsD_mcpbpy.frcmod (6447 bytes)
2. ArsD_tleap.out (11762 bytes)
3. ArsD_tleap.in (1031 bytes)
[AMBER] Problem with antechamber/acdoctor Sarah Fegan - UKRI STFC (Wed Sep 26 2018 - 03:15:11 PDT)
1. benzene.frcmod (200 bytes)
2. benzene.ac (1719 bytes)
3. benzene.mol2 (1602 bytes)
[AMBER] Umbrella sampling scripts emanuele falbo (Thu Sep 27 2018 - 06:33:59 PDT)
1. 90.perl (3010 bytes)
Re: [AMBER] Umbrella sampling scripts emanuele falbo (Thu Sep 27 2018 - 07:14:28 PDT)
1. 90-modified.perl (2858 bytes)

Amber Archive Sep 2018 by messages with attachments