[AMBER] Clustering_distance_metric_option_general_rule

From: Antonio Amber Carlesso <antonio.amber.carlesso.gmail.com>
Date: Sun, 16 Sep 2018 10:26:25 +0200

Hi all,
We would like to use CPPTRAJ to determine structure populations from MD

Do you have any suggestion for distance metric option to be used to analyze
RNA stem loop and RNA dual stem loop?

This tutorial (http://www.amber.utah.edu/AMBER-workshop/London-2015/Cluster/
) suggests RMSD of atoms in as distance metric. Any other suggestion?

Thank you!
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Received on Sun Sep 16 2018 - 01:30:02 PDT
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