Dear Amber users,
I have accidentally upgraded my Ubuntu desktop to version 18 which results
in amber MPI and CUDA versions at halt. I was able to successfully
recompile MPI version even though CUDA version resulted in following error.
*In file included from
/usr/local/cuda/bin/..//include/cuda_runtime.h:78:0, from
<command-line>:0:/usr/local/cuda/bin/..//include/host_config.h:119:2:
error: #error -- unsupported GNU version! gcc versions later than 5 are not
supported! #error -- unsupported GNU version! gcc versions later than 5 are
not supported! ^~~~~Makefile:175: recipe for target 'cuda_cg_wrapper.o'
failedmake[2]: *** [cuda_cg_wrapper.o] Error 1make[2]: Leaving directory
'/home/senal-research/amber16/AmberTools/src/pbsa'Makefile:447: recipe for
target 'cuda_serial' failedmake[1]: *** [cuda_serial] Error 2make[1]:
Leaving directory '/home/senal-research/amber16/AmberTools/src'Makefile:7:
recipe for target 'install' failedmake: *** [install] Error 2*
Following are the outputs for gcc --version , nvcc --version and nvidia-smi
commands.
*gcc (Ubuntu 7.3.0-16ubuntu3) 7.3.0Copyright (C) 2017 Free Software
Foundation, Inc.This is free software; see the source for copying
conditions. There is NOwarranty; not even for MERCHANTABILITY or FITNESS
FOR A PARTICULAR PURPOSE.*
*senal-research.crlc-xeon:~$ nvcc --versionnvcc: NVIDIA (R) Cuda compiler
driverCopyright (c) 2005-2017 NVIDIA CorporationBuilt on
Fri_Nov__3_21:07:56_CDT_2017Cuda compilation tools, release 9.1, V9.1.85*
*senal-research.crlc-xeon:~$ nvidia-smi Tue Sep 18 09:08:51 2018
+-----------------------------------------------------------------------------+|
NVIDIA-SMI 390.87 Driver Version: 390.87
||-------------------------------+----------------------+----------------------+|
GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC
|| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute
M.
||===============================+======================+======================||
0 GeForce GTX 108... Off | 00000000:03:00.0 On | N/A
|| 0% 49C P8 15W / 250W | 534MiB / 11177MiB | 0%
Default
|+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+|
Processes: GPU Memory
|| GPU PID Type Process name
Usage
||=============================================================================||
0 3356 G /usr/lib/xorg/Xorg 26MiB
|| 0 3440 G /usr/bin/gnome-shell
50MiB || 0 3794 G
/usr/lib/xorg/Xorg 212MiB || 0 3873
G 2MiB || 0
4027 G /usr/bin/gnome-shell 162MiB ||
0 12625 G ...al-research/spartan16.2_x86-64/sp_gui_r 77MiB
|+-----------------------------------------------------------------------------+*
I would like for a possible solution before I downgrade my Ubuntu version.
Regards,
--
D L Senal Dinuka
Grad.Chem., A.I.Chem.C.
Research Assistant
College of Chemical Sciences
Institute of Chemistry Ceylon
Rajagiriya
Sri Lanka
+94 77 627 4678
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Received on Mon Sep 17 2018 - 21:00:02 PDT
