You need to upgrade your gnu compilers. Make sure to upgrade all of gcc,
g++, and gfortran. Furthermore, make sure all of your environment
variables are pointing towards the same compilers of consistent versions
greater than or equal to 5.4. You do NOT need to downgrade Ubuntu--upgrade
your GNU.
Dave
On Mon, Sep 17, 2018 at 11:43 PM senal dinuka <senal.ichemc.edu.lk> wrote:
> Dear Amber users,
> I have accidentally upgraded my Ubuntu desktop to version 18 which results
> in amber MPI and CUDA versions at halt. I was able to successfully
> recompile MPI version even though CUDA version resulted in following error.
>
>
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>
> *In file included from
> /usr/local/cuda/bin/..//include/cuda_runtime.h:78:0, from
> <command-line>:0:/usr/local/cuda/bin/..//include/host_config.h:119:2:
> error: #error -- unsupported GNU version! gcc versions later than 5 are not
> supported! #error -- unsupported GNU version! gcc versions later than 5 are
> not supported! ^~~~~Makefile:175: recipe for target 'cuda_cg_wrapper.o'
> failedmake[2]: *** [cuda_cg_wrapper.o] Error 1make[2]: Leaving directory
> '/home/senal-research/amber16/AmberTools/src/pbsa'Makefile:447: recipe for
> target 'cuda_serial' failedmake[1]: *** [cuda_serial] Error 2make[1]:
> Leaving directory '/home/senal-research/amber16/AmberTools/src'Makefile:7:
> recipe for target 'install' failedmake: *** [install] Error 2*
>
> Following are the outputs for gcc --version , nvcc --version and nvidia-smi
> commands.
>
>
>
>
> *gcc (Ubuntu 7.3.0-16ubuntu3) 7.3.0Copyright (C) 2017 Free Software
> Foundation, Inc.This is free software; see the source for copying
> conditions. There is NOwarranty; not even for MERCHANTABILITY or FITNESS
> FOR A PARTICULAR PURPOSE.*
>
>
>
>
>
> *senal-research.crlc-xeon:~$ nvcc --versionnvcc: NVIDIA (R) Cuda compiler
> driverCopyright (c) 2005-2017 NVIDIA CorporationBuilt on
> Fri_Nov__3_21:07:56_CDT_2017Cuda compilation tools, release 9.1, V9.1.85*
>
>
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> *senal-research.crlc-xeon:~$ nvidia-smi Tue Sep 18 09:08:51 2018
>
> +-----------------------------------------------------------------------------+|
> NVIDIA-SMI 390.87 Driver Version: 390.87
>
> ||-------------------------------+----------------------+----------------------+|
> GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC
> || Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute
> M.
>
> ||===============================+======================+======================||
> 0 GeForce GTX 108... Off | 00000000:03:00.0 On | N/A
> || 0% 49C P8 15W / 250W | 534MiB / 11177MiB | 0%
> Default
>
> |+-------------------------------+----------------------+----------------------+
>
> +-----------------------------------------------------------------------------+|
> Processes: GPU Memory
> || GPU PID Type Process name
> Usage
>
> ||=============================================================================||
> 0 3356 G /usr/lib/xorg/Xorg 26MiB
> || 0 3440 G /usr/bin/gnome-shell
> 50MiB || 0 3794 G
> /usr/lib/xorg/Xorg 212MiB || 0 3873
> G 2MiB || 0
> 4027 G /usr/bin/gnome-shell 162MiB ||
> 0 12625 G ...al-research/spartan16.2_x86-64/sp_gui_r 77MiB
>
> |+-----------------------------------------------------------------------------+*
>
> I would like for a possible solution before I downgrade my Ubuntu version.
>
> Regards,
> --
> D L Senal Dinuka
> Grad.Chem., A.I.Chem.C.
> Research Assistant
> College of Chemical Sciences
> Institute of Chemistry Ceylon
> Rajagiriya
> Sri Lanka
> +94 77 627 4678
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Sep 17 2018 - 21:00:02 PDT
