Re: [AMBER] Regarding nastruct command in cpptraj

From: Rajarshi Roy <phd1701171011.iiti.ac.in>
Date: Fri, 21 Sep 2018 00:35:42 -0700

Dear Daniel
I am using amber16 toolbox.

On Thu, Sep 20, 2018 at 7:58 AM Daniel Roe <daniel.r.roe.gmail.com> wrote:

> Hi,
>
> What version of cpptraj are you using?
>
> -Dan
> On Tue, Sep 18, 2018 at 1:40 PM Rajarshi Roy <phd1701171011.iiti.ac.in>
> wrote:
> >
> > Dear amber users and developers
> >
> > I have a query regarding to *nastruct* command in *cpptraj*. I am
> > simulating a dsRNA with a single G-G mismatch. But when I was running the
> > nastruct command, except that mismatch basepair, structural parameters of
> > other base pairs are shown. Can anyone have any idea about how to fix
> this
> > issue?
> > Thanking you.
> >
> > --
> > *with regards*
> >
> > *Rajarshi Roy*
> >
> >
> > *PhD Research Scholar*
> >
> > *Biosciences and Biomedical Engineering*
> >
> > *Indian Institute of Technology, Indore*
> > *India*
> > _______________________________________________
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
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>


-- 
*with regards*
*Rajarshi Roy*
*PhD Research Scholar*
*Biosciences and Biomedical Engineering*
*Indian Institute of Technology, Indore*
*India*
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Received on Thu Sep 20 2018 - 12:30:01 PDT
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