I provided one of my input files for HBOND analysis a few months ago, both for occupancy and lifetime analysis.
You can find it in the list archive: http://archive.ambermd.org/201805/0235.html
Hope that helps!
// Gustaf
> On 13 Sep 2018, at 03:30, Meng Wu <wumeng.shanghaitech.edu.cn> wrote:
>
> Deal amber users,
>
> I am going to make the H-bond analysis between the substrate molecule--acetates and the channel protein during the MD process in which substrate molecules pass through. I have read the 'hbond' command in Amber16 manual but still have no idea, could anybody give some guidance ? Thank you in advance!
>
> Best regards,
> Vector
>
>
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Received on Wed Sep 12 2018 - 23:30:01 PDT
