[AMBER] difference of distances using cpptraj in free energy plot

From: Nisha Amarnath Jonniya <phd1601271002.iiti.ac.in>
Date: Wed, 12 Sep 2018 17:37:10 +0530

Dear Amber users,

   I have a query regarding free energy plot with rmsd on x-axis and
difference of two distances on y-axis (D1-D2), where D1 is the distance
between two residues say Lys-Glu and D2 is another distance say Glu-Arg. So
how to calculate this differences of the distance using CPPTRAJ for free
energy plot.

Nisha Amarnath Jonniya
PhD Research Scholar
Biosciences and Biomedical Engineering
Indian Institute of Technology, Indore
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Received on Wed Sep 12 2018 - 05:30:02 PDT
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